Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01656 ATGGCGGAGGTGAAGGAAGAGAGTAAATCGAGTAGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAAGTGCCGAAGCGCATGACGGAGGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCGTTGGTTGACGAGGTCAACATCATCAGAGACAAAGTTTCTCGTGCCTCCCGAGGATGCTGCTTTCTGATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCCTGTCACAACAAGAAAACGCTGCCTGGGGCTTCCAGTCCGTTGCAAGTGAAGTATGCTGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCGGATCTTTTCTCAAAGTATGGAAACATAAAGGATTTACAGATTTTAAGAGGTTCCCAGCAGACAAGTAAAGGGTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCGTAGCTGCTCTTGAGGCCATCAATGGAAAGCATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACAAACTCGAAGGGCTCAAAAAGCGCAGTCCCAAGTTGCTAACATGCCTCATGCTGATCCTCAACAACCCTCATTATATGGAGCCGTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGAATCAACCAGGTTTTCATAATATGAACATGAACCAAGTAAATGCAGTGAGGCCTGAACTTGGTCACAGTATGAACCCTAGAAATTATCCTGCCCCTCCTGCAAGTTACATGGGCTCATATCCTGCCATGCCAGGTATACAGCATCCAATGGTATATCCCAGAGGAATGGCAAGTCCGAGGCCAGTGAGTAGTTCTCTTGGTTCTGTTTCACCTGGAGGTGGGAATAGCAACTACTCATCTTCAGGTGCCAGCAAAAGTTCCAATGGTCAGATTGAAGGACCACCCGGTGCCAATTTATTTATTTATCACATTCCTCAAGAATACGGAGATCAAGAGCTGGCAGATGCATTTCAGCAGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCGACTGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTACGATACTCCAGAAGCTGCTCAATCTGCCATTAGTATGATGAACGGTTGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGACAACAAACAGAGTAAGCTTTACTGA 1242 0.4436 MAEVKEESKSSSEESVKLFVGQVPKRMTEDEVLAMFKEFALVDEVNIIRDKVSRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSKYGNIKDLQILRGSQQTSKGCAFLKYETKEQAVAALEAINGKHTMEGSSVPLVVKWADTEKERQTRRAQKAQSQVANMPHADPQQPSLYGAVPMGYVPPYNGYGYQNQPGFHNMNMNQVNAVRPELGHSMNPRNYPAPPASYMGSYPAMPGIQHPMVYPRGMASPRPVSSSLGSVSPGGGNSNYSSSGASKSSNGQIEGPPGANLFIYHIPQEYGDQELADAFQQFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKLY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01656 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 406 IPR000504 GO:0003723
Viun7g01656 413 FunFam RNA-binding protein BRN1 296 405 - -
Viun7g01656 413 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Viun7g01656 413 FunFam RNA-binding protein BRN1 isoform X1 101 193 - -
Viun7g01656 413 CDD RRM1_2_CELF1-6_like 105 180 - -
Viun7g01656 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Viun7g01656 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
Viun7g01656 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 400 IPR000504 GO:0003723
Viun7g01656 413 SMART rrm1_1 105 180 IPR000504 GO:0003723
Viun7g01656 413 SMART rrm1_1 17 93 IPR000504 GO:0003723
Viun7g01656 413 SMART rrm1_1 329 402 IPR000504 GO:0003723
Viun7g01656 413 CDD RRM1_2_CELF1-6_like 18 93 - -
Viun7g01656 413 MobiDBLite consensus disorder prediction 285 321 - -
Viun7g01656 413 CDD RRM3_CELF1-6 330 402 - -
Viun7g01656 413 Gene3D - 2 99 IPR012677 -
Viun7g01656 413 Gene3D - 301 405 IPR012677 -
Viun7g01656 413 PANTHER OS02G0815200 PROTEIN 310 409 - -
Viun7g01656 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Viun7g01656 413 FunFam RNA-binding protein BRN1 2 100 - -
Viun7g01656 413 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Viun7g01656 413 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Viun7g01656 413 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Viun7g01656 413 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Viun7g01656 413 MobiDBLite consensus disorder prediction 292 321 - -
Viun7g01656 413 SUPERFAMILY RNA-binding domain, RBD 104 408 IPR035979 GO:0003676
Viun7g01656 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Viun7g01656 413 Gene3D - 100 193 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01656 Viun-Chr7 21384208 21388710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01656 328 412 Eukaryotic Initiation Factors Gene Family AT4G34110 32.184 1.86e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01656 K13207 - gmx:100796156 687.952