Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01640 ATGAAGGAAAAGGTGGATTCCCCAGTTACAGTTCTGGAAGACTATTTCAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGAGCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGCTTCTAGGTGGCATGCATTTCTTCACTTGTTTAGAAATGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCAGTGCCCTGAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGCTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCGTCAATTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCCGATGAAATCATAGGGGATTTTTTATCAGAACTTGGTGTAATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCAGTTCTTTATGGTTCCAAGGAGAAACTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATTATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGACTAGCAAAATGGCTGCCAGAAAATTGGACTCATCACACAGTTTCAAAATTTGAAGGAACTTTCGGTTACCTTGCACCTGAATACTTGCTGCATGGCATAGTGGACGAGAAAACAGACATATTTGCTTTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGTGCACTTGATTATTCACAGCAAAGTCTTGTGTTGTGGGCAAAACCATTGCTGAAAAAAAATGATGTCATGGAGCTGATTGATCCTTCACTATTAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCATCGATTCGTCGGCCCTCTACAAGACAGGTTGTACAGCTTCTTAACGGCAACCTTAGCTGCTTTAAGGGCATGAAGAAAACCCGAATGCCGTTTTTCAGAAGAGTCTTCCGAGAAGAACTTCATGATTCAGAATAG 1233 0.4242 MKEKVDSPVTVLEDYFRSSDSESSSSKEPAVDSESQDLSKHASRWHAFLHLFRNGSKKHTNTLHPLSALKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRHKIALGIAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDVMELIDPSLLGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQVVQLLNGNLSCFKGMKKTRMPFFRRVFREELHDSE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01640 410 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g01640 410 Gene3D Transferase(Phosphotransferase) domain 1 192 394 - -
Viun7g01640 410 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 394 - -
Viun7g01640 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Viun7g01640 410 Gene3D Phosphorylase Kinase; domain 1 90 189 - -
Viun7g01640 410 MobiDBLite consensus disorder prediction 1 36 - -
Viun7g01640 410 SUPERFAMILY Protein kinase-like (PK-like) 96 380 IPR011009 -
Viun7g01640 410 MobiDBLite consensus disorder prediction 14 32 - -
Viun7g01640 410 ProSiteProfiles Protein kinase domain profile. 115 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g01640 410 Pfam Protein kinase domain 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g01640 410 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
Viun7g01640 410 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Viun7g01640 410 PANTHER OS08G0249100 PROTEIN 6 405 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01640 Viun-Chr7 21208921 21212778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01640 102 376 Trihelix Transcription Factor Family AT1G68690 41.958 4.15e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun7g01640 Pkinase 8.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01640 - - gmx:100780587 761.911