Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01610 ATGACCATCTCAATGTTCATGTGCAGATTAAGACAACCCATGGTAAACATTCCCTGCAGTGGGAAAAAACTGAACGTGAGACAAATTGAGAAAGAGAAAGTAGTGGTTGTAATGGGAGCCACTGGGGCAGGGAAGTCAAGGCTGTCGATTGACCTAGCCACATGTTTTCCATCAGAAATCATAAACTCCGACAAAATTCAAGTGTACCAAGGTCTCGACATAGTCACAAACAAAATCCCAAAGGAGGAGCAACGTGGGGTGCACCACCACTTACTAGGAACAATAAACCCCGACATAGACTTCACACCCTCTGATTTCATTGACACCTCATCATCGGCCATTGACGCCATCACCACAGCCCAGAAGCTTCCAATCATCGTTGGCGGCTCCAACTCCTATCTCGAGGCCTTGATCGACGACGACGATTACAAGTTCCGGTCGCGCTACGATTTTCTCTGCCTCTGGGTTGACGTCGCAATGCCCGTGCTTCAATCCTACGTGGCGGAACGGGTTGACCACATGTTCCGTAACGGAATGGTTGACGAGCTGCGACCTTTTTACAGTCCCGACGGCGATTACTCCAGAGGGATTAGAAGAGCCATTGGGGTTCCTGAATTCGACGAGTACTTTCGGAGGGAGCAGGTTGTGGACGAGGAAACCAAACAGAGGTTGTTGGAAGATGCGATTAAGGAAATAAAATTGAACACGTGGAAACTTGCCGTGAAACAGTTGGGGAAGATTCACAGGCTGAGGAACGTTAAGAGATGGGAGATTCATCGCTTGGACGCCACGCCCGTGTTTCGGAGGCGCGGGGAAGAAGCCAACGAGGCGTGGAAGAAAATGGTGGCGGAACCGAGTGCTATGGTCGTTGCGCGCTTTCTCTGTAACTCCAAAAACAATGTTAACGTTGTTTCTGGACTTACACTGTTGCCACCTTCACCTTCGGAGAATGTTATGGCTGCGGCAACGTGCTAG 975 0.4974 MTISMFMCRLRQPMVNIPCSGKKLNVRQIEKEKVVVVMGATGAGKSRLSIDLATCFPSEIINSDKIQVYQGLDIVTNKIPKEEQRGVHHHLLGTINPDIDFTPSDFIDTSSSAIDAITTAQKLPIIVGGSNSYLEALIDDDDYKFRSRYDFLCLWVDVAMPVLQSYVAERVDHMFRNGMVDELRPFYSPDGDYSRGIRRAIGVPEFDEYFRREQVVDEETKQRLLEDAIKEIKLNTWKLAVKQLGKIHRLRNVKRWEIHRLDATPVFRRRGEEANEAWKKMVAEPSAMVVARFLCNSKNNVNVVSGLTLLPPSPSENVMAAATC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01610 324 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 293 IPR039657 -
Viun7g01610 324 Pfam IPP transferase 145 244 - -
Viun7g01610 324 Pfam IPP transferase 67 140 - -
Viun7g01610 324 FunFam Adenylate isopentenyltransferase 5, chloroplastic 160 258 - -
Viun7g01610 324 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Viun7g01610 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 187 IPR027417 -
Viun7g01610 324 Gene3D - 31 294 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01610 Viun-Chr7 20837493 20838805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01610 147 294 C2H2 Transcription Factor Family AT2G27760 32.000 3.29e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01610 K10760 - gmx:100799145 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01610 7 20837493 20838805 Viun7g01610 7 20837493 20838805 ECH
Viun1g01964 1 30991479 30992764 Viun7g01610 7 20837493 20838805 PCT