Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01609 ATGGAAGAGCAAAGTAATGAAGAGAATACTGTGCAACTAACATCCTGCGACACTGGGGGAACAGCCCATGATGTTTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCACCCCACAACTATGTTAAGTATCTTTCAGAATCCTCAACATATCTGCCAAACACTGATTACATGATGGGGGGTAGTTATCTACCTGTTGGCAGCATCAGTGATGGTAACGTGGTTAATGGATCAGACACAAACTTCTTTTACAATGATCCAGGGAAAGTCTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGATGGGGTTTTGGAGAGCTGATGAAGGGGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTGTGCTGAGAGTCAAGCTTTATGGACAACAGATTCTCTTGGAGATAAGCATAATGCTTTGCATGATCCAACGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAATCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCGTATATACTGGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAAATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATAAACCAACAGATTCTGAACGAACCCCTTGAGGAGATAATGGGGAAATTACTTGAAGAACATTCTGCAGCAGCTGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAGTGAGGCTATGCAAATGTTTGGGGGAGTGCTCTAG 984 0.4217 MEEQSNEENTVQLTSCDTGGTAHDVSHSAEGHLIPNPKFFIAASSGRNESHWTCFPKPPHNYVKYLSESSTYLPNTDYMMGGSYLPVGSISDGNVVNGSDTNFFYNDPGKVCAFKPIGSSSNDLDIKKMGFWRADEGEEVIKVETESSQNFLCAESQALWTTDSLGDKHNALHDPTVMVGAPASLPKSGSSSSKEKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSKLQEESTGIPLVFHEGYGHYINQQILNEPLEEIMGKLLEEHSAAAGQLLESKGLFLLPMALVDDLSEAMQMFGGVL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01609 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 254 IPR036638 GO:0046983
Viun7g01609 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 241 IPR011598 GO:0046983
Viun7g01609 327 MobiDBLite consensus disorder prediction 181 204 - -
Viun7g01609 327 SMART finulus 198 247 IPR011598 GO:0046983
Viun7g01609 327 MobiDBLite consensus disorder prediction 7 22 - -
Viun7g01609 327 CDD bHLH_AtbHLH_like 200 247 IPR045239 -
Viun7g01609 327 Pfam Helix-loop-helix DNA-binding domain 194 242 IPR011598 GO:0046983
Viun7g01609 327 MobiDBLite consensus disorder prediction 1 28 - -
Viun7g01609 327 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 312 - -
Viun7g01609 327 Gene3D - 190 259 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01609 Viun-Chr7 20828846 20831183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01609 199 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.024 1.06e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01609 HLH 8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01609 - - gmx:100788949 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01609 7 20828846 20831183 Viun7g01609 7 20828846 20831183 ECH