Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01588 ATGGCTGCACCACTAGGCAATAGGCTCCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCATCTCTCCAAAGAAGCCAACAACTTAGAGAACTGTATGAATCACTGTCTGCCGGAGAGACAAATCCGCCAACTCGACGGCCTTGCGCCGCCTTGTCGCCAGAGGACTTGACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATATGCTAGGAGGCAGCATGTTTGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGAATACAGACAGTGGTGTGCATTCCTTTACTGGACGGCGTCGTTGAGTTTGGTACAACGGATAAGGTTCAAGAAGACCTTAACTTCATCCACCACGTGAAGACATTCTTCGCAGACCACCACCACCCTCTGCCGCCAAAGCCCGCCTTGTCCGAGCACTCAACCTCCAACCCCATCTCCTCCTCCGACCACATCCCCGCCATCATGTACACCGTCGCAGACCCACCCGCAGCCAGTGCCGCCCTAAACGACGAGATGGACGAAGATGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGGAGCGGAGTCCGCCTCTGAGGACGAGACCCGAGGCGGCATTGCTCGGCGGGTCACGACGCCGGAGATGGAGGACGTGACGAGGGCGGAGCCCAGCGAGCTGATGCAGCTGGAGATGCCGGAGGATATCCGGGTCGGGTCTCCGAACGACGGGTCGAACAACTTGGACTCGGACTTCCACTTGCTGGCGGTGAGTCAAGGAGGAAACGCGGCGGGGCAGGCTGAGTCGAGCCTGAGATGGGTCCCGAGTGAAGAGCCATTACAAGTTCAACTACCAGCTTCAGCCCCTCATCTATTAGAAGACTTGACCCAAGAGGACAATCACTACTCTGAAACCGTATCCAACATTCTCCAAAACCAGTCCAGCCGGTGGCCCACATCGCCCACCTCCGTTGGCTACATCACATACTCCACGCATTCAGCTTTCACAAAGTGGAGCAGCCGCGCCAGCCACCTCTTCCACCCGGCGGTGGACGGCCCCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCCTATCTACACGCCAAGAACCCCGCCGACACTTCCCCCCAAACCGCCGCCGACCCCAAGCTGCGCGGCAAGGGAACGCCGCAGGATGAGCTGAGCGCCAACCACGTGCTCGCGGAGCGCCGGCGCCGCGAGAAGCTGAACGAGCGGTTCGTAATCCTGCGGTCACTGGTCCCCTTCGTCACCAAAATGGACAAGGCATCCATTCTGGGTGACACCATCGAGTATGTGAAGCAGCTGCGGCGGAAGATCCAGGAGCTGGAGGCGCGTAACCGCCACACTGAGGCGGAACACCGTTCCAAGCTCCCAGAGGTGACGGTTCAAAGGACGAGCAGCAATTCGAGCAAGGAGCAGCAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGCGGCGAAGGCGACGGCGGTGGAGGCTGAGACGGCAACATCAGTGCAAGTTTCGATCATTGAGAGCGACGCACTGTTGGAGATCGAGTGCGTCCACAGAGAAGGGTTGCTTCTTGATGTGATGCAGATGCTGAGGGAGGTGAGAATAGAGGTTATTGGGGTGCAGTCATCACTTAGCAATGGCGTGTTCATGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCGAACGGGAAGAAGGTGAGCATTGTGGAAGTGAAGAAGGCCCTTAACCAAATCATTCCCCATCCTCTCCACTGA 1998 0.5666 MAAPLGNRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTDKVQEDLNFIHHVKTFFADHHHPLPPKPALSEHSTSNPISSSDHIPAIMYTVADPPAASAALNDEMDEDEEEEEEEEEEEEEEEEGAESASEDETRGGIARRVTTPEMEDVTRAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHLLAVSQGGNAAGQAESSLRWVPSEEPLQVQLPASAPHLLEDLTQEDNHYSETVSNILQNQSSRWPTSPTSVGYITYSTHSAFTKWSSRASHLFHPAVDGPSQWLLKYILFTVPYLHAKNPADTSPQTAADPKLRGKGTPQDELSANHVLAERRRREKLNERFVILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRHTEAEHRSKLPEVTVQRTSSNSSKEQQRSGVTVMEKRKVRIVEGVAAKATAVEAETATSVQVSIIESDALLEIECVHREGLLLDVMQMLREVRIEVIGVQSSLSNGVFMAELRAKVKEHANGKKVSIVEVKKALNQIIPHPLH 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01588 665 PANTHER TRANSCRIPTION FACTOR TT8 7 661 - -
Viun7g01588 665 MobiDBLite consensus disorder prediction 522 552 - -
Viun7g01588 665 Coils Coil 233 267 - -
Viun7g01588 665 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Viun7g01588 665 MobiDBLite consensus disorder prediction 237 297 - -
Viun7g01588 665 Gene3D - 462 533 IPR036638 GO:0046983
Viun7g01588 665 MobiDBLite consensus disorder prediction 535 551 - -
Viun7g01588 665 MobiDBLite consensus disorder prediction 280 296 - -
Viun7g01588 665 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Viun7g01588 665 SMART finulus 467 516 IPR011598 GO:0046983
Viun7g01588 665 MobiDBLite consensus disorder prediction 237 264 - -
Viun7g01588 665 Pfam Helix-loop-helix DNA-binding domain 464 511 IPR011598 GO:0046983
Viun7g01588 665 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 530 IPR036638 GO:0046983
Viun7g01588 665 Coils Coil 500 527 - -
Viun7g01588 665 MobiDBLite consensus disorder prediction 438 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01588 Viun-Chr7 20533969 20542905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01588 303 662 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.808 2.82e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01588 bHLH-MYC_N 9.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01588 - - gmx:100786815 1062.37