Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01567 ATGAGAGAGGGGCTGAGATCGCGGGCGCGTTTGGGGACGGTTTCTGGAGGCGAAGAAGTTGTTCACAAGAAAAAGGTTGTTGTGAAGAGCGAGGCTGTTGATAAGGGTGGTGAGGGTTTGGAGGTGCAGAACTCAACGATTGAGAAGAAGGGTGAAGTTGCACTTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCAAGTGGTGAGGTTGACTTGGAAGAGAATGAGAGTGGTAAGGGTTGTTTTAGTGGTGGGGGTGATACTGTAGTAGTTGAGGTAGATAAGAAGGCAAAGAAGGAGCAAGGTTCAAATAATGAAGTACTGGTTGGGGGTCGAGTGTTGCGCTCAAGGTCTAAGGGGGTGAAGGATAGAAGAGTGTATTATGGAGAGAGTGAGGATGCTGTTTCTGAGAGTGATAGAGAATGTAGTGGGGTTGAGACGGTGAAAGTTAAGACGGAATGTGAAGAAGCTGGTGAATTTTTGGCTGATAGTTATGAGAATGAAAAAGCTAAGGTGAAGAAGGCAGAGAATGGCACAGGGAATTTGAAACGAAAGCGTGGGAGGCCTCCCAAAATAAAGTTGAAAGTGGAAGATCAACCAGTTCATCAGTCGCCACGTAAGCGTGGAAGACCCCCTCTTGCCAGCAAACAAAACCATGTGGTGGTGCATAATAGAAAAGAAAAGGTTGTCCTTCGAAAAGATAAAAAGAGTTTAACTATGAGACGTGATGCTAATGTGAATGCAATTGATGATGCGGATTCAAGGAAATCTGCTGGGGTTGAGTTAGAAAAGAAGGAAGTCTCTTCTGTCAAGAAGTCTAAATTCACTAAGGCTTTGGAAACTGGGAACAATGTGGTGGCCTCACCAGTAAGATCAAATACTGATAATGCACTTGTCTCCGAGAAAAGTGGAAGAAATAGAGTTAAGCAGTTAGTGAGGGATCAAATAAAGGAAATTCTCTCAGCTGCCGGCTGGACAGTTGACTATAGACCTAGGAATGGTAGAGAGTACCATGATGCAGTTTATGTTAGTCTGGACGGACACACGCACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCGGGCTTCAAATTTACACCAATAGCAGCTGAGGATTTCCAAATACTCACTAAGGTAATTAAAAAGCAAAGACAAGGGAAGGTTAAATCTGTAAAGAAAGGGGGAAAGGGTGGGAATAAAAACAAAGGAAGGTCAGGTTCTGGTGCAGCCGTGGGTAAGTCAGTGAAGAGGAAAATGAAAAGGAAACGGTCACCTGGAGACACAGATTCTATATCACCGAACAGGATGCCAGTTCTTGTGAGGGATCATAAGCGACACAAAACACAACATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTAAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGTTTGCCTGGATGATTGATTTGGGCACAGTCCTTCTAAATGCGAAGGTTCATTATAAGGCACCCGAAGATAAAAGTGCAGCATTGGATGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTGATAAAGTCATTACAATTTCAGAATTTGAAGTTCATGCAGGAAGAAAATTTGGTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTACAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCAGGGTTTTCATTTTGTTGATGTTGCGGGTGAGGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACTTGATATGTTGTGATGGTTGCCCGTCAACATTCCATCAAGACTGCTTGGATATACAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGCTCAGACCAAAAGGATAGTGATGATGATCTTACTGTGTCAAAATTACTCACGTGCCGACTATGTGAGCAAAAATATCACAGATCCTGCATTGAGGCAAATGATTGCAATACTATTGATTACAATGATGTGATCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGAGACTTGAAATGCTCCTAGGGGTTAGACATGAAATTGAAGATGGGTATGCTTGGACTTTTATTAGGCGGTCAGATGTTGGCATTGATGATTCTCAGAAAAAACCTCAGATGGTTGAATGTAATTCTAAGCTCGCTGTGGCGTTATCAATAATGGATGAGTGCTTCATGCCGTATATTGATCATAGAAGTGGGGTGAATCTGATCCACAGTATTCTGTATAACCGTGGGTCAAACTTCAATCGTCTGAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATGATTTGTGCTGCATCTATCAGGATCCATGGAAACCAACTAGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGCAGGCTTCTAAACGCCATTGAATTGGGACTCAGCTCTTTAAATGTTGAGTTATTGGTGATACCAGCTATCTCAGAGCTCAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCACTTGAATCAACAATCAAGCAAACAGTACATAATACAAATCTATTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATGATATGGCTAGTCATAATCCAATCCCTTCAGAAGCTGTCAATCAAATAGCATATAATTGCAATGGTGCGGGCTCATCTGGATCTGATTTGATCAATTATATTGAGATTCCTCCCTGCCCTAATACATGCCAAATAAATGACGAAGCCACATCTAATGAATCTGATTGTCATCTCCCTGAGGGTTCAGTGAATAATGTACCTGCCGTTGCTAGCAACATTAATGGTTGTAGACAATCTACTAAAGATGACACATGTGAAGTTGTTTGTCACACAGGTGATGAGAATCCAGTGATGGACAACACTAAAAAAAATGTTTGCGAAGATGTGACTGATACTAGTGGCGTAGCTGGAGATGGCCAGTTGAACACCACATCTTGTATTAACACTGAGGCTACAAAAGTACAGTGTGTTAATGTTTCGTTGGAGGTTACTGAAAACTTACCTAATCATGTTGCAGTATCAAATGAAGTTTTGTCAAATAACAAAAGTGCGGAAGACTCGGAACCCTGCGGTACAGAAAGTATTACAAGGGATTCAAAACTTTCTGCTGACTCTATTCACCAGGATTCATCTATTGTTTCTGACAGTTGTAAACTGAGAAGTGACACTGATTGTGGTCAACAGAACATCATAGGAACAGAAGAAAAACGTGGTGAATTTATTAGTGTTTGTGGTTCTAATGGTAGACCCAATGGTGATTGTGCCTCTGGGGAAGGTACTGCCGCCACTAATGAGTTATTGCACCTTCCATCACAGGACATGACCAATAAGAAGCCTTGGGTGAAAGGGTCTTCAGATCTACCTGAGCCTGATTTGCAGGTGGATCAAACAGAAGAGAACAGTGCTCCCTCCCCATGGAGCCCTAACACTGCTTCTGGTTGTGCATCTACTGGCAGTGCTTCTCGTGGTAGTACAGAGGGGATTTTTTTGTCAAACCAAGCCAGTTGA 3675 0.4212 MREGLRSRARLGTVSGGEEVVHKKKVVVKSEAVDKGGEGLEVQNSTIEKKGEVALDVKEECGFDLNVSASGEVDLEENESGKGCFSGGGDTVVVEVDKKAKKEQGSNNEVLVGGRVLRSRSKGVKDRRVYYGESEDAVSESDRECSGVETVKVKTECEEAGEFLADSYENEKAKVKKAENGTGNLKRKRGRPPKIKLKVEDQPVHQSPRKRGRPPLASKQNHVVVHNRKEKVVLRKDKKSLTMRRDANVNAIDDADSRKSAGVELEKKEVSSVKKSKFTKALETGNNVVASPVRSNTDNALVSEKSGRNRVKQLVRDQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIAAEDFQILTKVIKKQRQGKVKSVKKGGKGGNKNKGRSGSGAAVGKSVKRKMKRKRSPGDTDSISPNRMPVLVRDHKRHKTQHKLRSGPLVRNAKEIDSETEGYVLYSGKRTLFAWMIDLGTVLLNAKVHYKAPEDKSAALDGKITGDGIHCGCCDKVITISEFEVHAGRKFGDPLQNIYVEEGKSLLQCLLDSWNKQDESERQGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIQKFPSGDWHCIYCCCKFCGSVNGCSDQKDSDDDLTVSKLLTCRLCEQKYHRSCIEANDCNTIDYNDVIFCGNRCQELSERLEMLLGVRHEIEDGYAWTFIRRSDVGIDDSQKKPQMVECNSKLAVALSIMDECFMPYIDHRSGVNLIHSILYNRGSNFNRLNYSGFVTAILERGDEMICAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELGLSSLNVELLVIPAISELRETWTSVFGFEPLESTIKQTVHNTNLLVFPHVDMLQKKISKHDMASHNPIPSEAVNQIAYNCNGAGSSGSDLINYIEIPPCPNTCQINDEATSNESDCHLPEGSVNNVPAVASNINGCRQSTKDDTCEVVCHTGDENPVMDNTKKNVCEDVTDTSGVAGDGQLNTTSCINTEATKVQCVNVSLEVTENLPNHVAVSNEVLSNNKSAEDSEPCGTESITRDSKLSADSIHQDSSIVSDSCKLRSDTDCGQQNIIGTEEKRGEFISVCGSNGRPNGDCASGEGTAATNELLHLPSQDMTNKKPWVKGSSDLPEPDLQVDQTEENSAPSPWSPNTASGCASTGSASRGSTEGIFLSNQAS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01567 1224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 670 IPR013083 -
Viun7g01567 1224 SMART PHD_3 647 707 IPR001965 -
Viun7g01567 1224 SMART PHD_3 605 646 IPR001965 -
Viun7g01567 1224 MobiDBLite consensus disorder prediction 194 208 - -
Viun7g01567 1224 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
Viun7g01567 1224 MobiDBLite consensus disorder prediction 402 417 - -
Viun7g01567 1224 MobiDBLite consensus disorder prediction 1179 1224 - -
Viun7g01567 1224 MobiDBLite consensus disorder prediction 171 186 - -
Viun7g01567 1224 MobiDBLite consensus disorder prediction 1158 1224 - -
Viun7g01567 1224 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Viun7g01567 1224 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Viun7g01567 1224 PANTHER PHD FINGER PROTEIN 12 272 1086 IPR042163 GO:0003714|GO:0045892
Viun7g01567 1224 MobiDBLite consensus disorder prediction 171 221 - -
Viun7g01567 1224 SUPERFAMILY FYVE/PHD zinc finger 595 646 IPR011011 -
Viun7g01567 1224 CDD PHD1_AIRE 606 645 - -
Viun7g01567 1224 Pfam Tify domain binding domain 528 577 IPR032308 -
Viun7g01567 1224 MobiDBLite consensus disorder prediction 402 453 - -
Viun7g01567 1224 MobiDBLite consensus disorder prediction 1067 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01567 Viun-Chr7 20207457 20215660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01567 107 912 PHD Transcription Factor Family AT5G36670 39.136 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01567 - - gmx:100784172 1542.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01567 7 20207457 20215660 Viun7g01567 7 20207457 20215660 ECH
Viun1g02006 1 31520297 31524997 Viun7g01567 7 20207457 20215660 PCT