LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g01566	ATGAGAGAGGGGCTGAGATCGCGGGCGCGTTTGGGGACGGTTTCTGGAGGCGAAGAAGTTGTTCACAAGAAAAAGGTTGTTGTGAAGAGCGAGGCTGTTGATAAGGGTGGTGAGGGTTTGGAGGTGCAGAACTCAACGATTGAGAAGAAGGGTGAAGTTGCACTTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCAAGTGGTGAGGTTGACTTGGAAGAGAATGAGAGTGGTAAGGGTTGTTTTAGTGGTGGGGGTGATACTGTAGTAGTTGAGGTAGATAAGAAGGCAAAGAAGGAGCAAGGTTCAAATAATGAAGTACTGGTTGGGGGTCGAGTGTTGCGCTCAAGGTCTAAGGGGGTGAAGGATAGAAGAGTGTATTATGGAGAGAGTGAGGATGCTGTTTCTGAGAGTGATAGAGAATGTAGTGGGGTTGAGACGGTGAAAGTTAAGACGGAATGTGAAGAAGCTGGTGAATTTTTGGCTGATAGTTATGAGAATGAAAAAGCTAAGGTGAAGAAGGCAGAGAATGGCACAGGGAATTTGAAACGAAAGCGTGGGAGGCCTCCCAAAATAAAGTTGAAAGTGGAAGATCAACCAGTTCATCAGTCGCCACGTAAGCGTGGAAGACCCCCTCTTGCCAGCAAACAAAACCATGTGGTGGTGCATAATAGAAAAGAAAAGGTTGTCCTTCGAAAAGATAAAAAGAGTTTAACTATGAGACGTGATGCTAATGTGAATGCAATTGATGATGCGGATTCAAGGAAATCTGCTGGGGTTGAGTTAGAAAAGAAGGAAGTCTCTTCTGTCAAGAAGTCTAAATTCACTAAGGCTTTGGAAACTGGGAACAATGTGGTGGCCTCACCAGTAAGATCAAATACTGATAATGCACTTGTCTCCGAGAAAAGTGGAAGAAATAGAGTTAAGCAGTTAGTGAGGGATCAAATAAAGGAAATTCTCTCAGCTGCCGGCTGGACAGTTGACTATAGACCTAGGAATGGTAGAGAGTACCATGATGCAGTTTATGTTAGTCTGGACGGACACACGCACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCGGGCTTCAAATTTACACCAATAGCAGCTGAGGATTTCCAAATACTCACTAAGGTAATTAAAAAGCAAAGACAAGGGAAGGTTAAATCTGTAAAGAAAGGGGGAAAGGGTGGGAATAAAAACAAAGGAAGGTCAGGTTCTGGTGCAGCCGTGGGTAAGTCAGTGAAGAGGAAAATGAAAAGGAAACGGTCACCTGGAGACACAGATTCTATATCACCGAACAGGATGCCAGTTCTTGTGAGGGATCATAAGCGACACAAAACACAACATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTAAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGTTTGCCTGGATGATTGATTTGGGCACAGTCCTTCTAAATGCGAAGGTTCATTATAAGGCACCCGAAGATAAAAGTGCAGCATTGGATGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTGATAAAGTCATTACAATTTCAGAATTTGAAGTTCATGCAGGAAGAAAATTTGGTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTACAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCAGGGTTTTCATTTTGTTGATGTTGCGGGTGAGGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACTTGATATGTTGTGATGGTTGCCCGTCAACATTCCATCAAGACTGCTTGGATATACAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGCTCAGACCAAAAGGATAGTGATGATGATCTTACTGTGTCAAAATTACTCACGTGCCGACTATGTGAGCAAAAATATCACAGATCCTGCATTGAGGCAAATGATTGCAATACTATTGATTACAATGATGTGATCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGAGACTTGAAATGCTCCTAGGGGTTAGACATGAAATTGAAGATGGGTATGCTTGGACTTTTATTAGGCGGTCAGATGTTGGCATTGATGATTCTCAGAAAAAACCTCAGATGGTTGAATGTAATTCTAAGCTCGCTGTGGCGTTATCAATAATGGATGAGTGCTTCATGCCGTATATTGATCATAGAAGTGGGGTGAATCTGATCCACAGTATTCTGTATAACCGTGGGTCAAACTTCAATCGTCTGAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATGATTTGTGCTGCATCTATCAGGATCCATGGAAACCAACTAGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGCAGGCTTCTAAACGCCATTGAATTGGGACTCAGCTCTTTAAATGTTGAGTTATTGGTGATACCAGCTATCTCAGAGCTCAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCACTTGAATCAACAATCAAGCAAACAGTACATAATACAAATCTATTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATGATATGGCTAGTCATAATCCAATCCCTTCAGAAGCTGTCAATCAAATAGCATATAATTGCAATGGTGCGGGCTCATCTGGATCTGATTTGATCAATTATATTGAGATTCCTCCCTGCCCTAATACATGCCAAATAAATGACGAAGCCACATCTAATGAATCTGATTGTCATCTCCCTGAGGGTTCAGTGAATAATGTACCTGCCGTTGCTAGCAACATTAATGGTTGTAGACAATCTACTAAAGATGACACATGTGAAGTTGTTTGTCACACAGGTGATGAGAATCCAGTGATGGACAACACTAAAAAAAATGTTTGCGAAGATGTGACTGATACTAGTGGCGTAGCTGGAGATGGCCAGTTGAACACCACATCTTGTATTAACACTGAGGCTACAAAAGTACAGTGTGTTAATGTTTCGTTGGAGGTTACTGAAAACTTACCTAATCATGTTGCAGTATCAAATGAAGTTTTGTCAAATAACAAAAGTGCGGAAGACTCGGAACCCTGCGGTACAGAAAGTATTACAAGGGATTCAAAACTTTCTGCTGACTCTATTCACCAGGATTCATCTATTGTTTCTGACAGTTGTAAACTGAGAAGTGACACTGATTGTGGTCAACAGAACATCATAGGAACAGAAGAAAAACGTGGTGAATTTATTAGTGTTTGTGGTTCTAATGGTAGACCCAATGGTGATTGTGCCTCTGGGGAAGGTACTGCCGCCACTAATGAGTTATTGCACCTTCCATCACAGGACATGACCAATAAGAAGCCTTGGGTGAAAGGGTCTTCAGATCTACCTGAGCCTGATTTGCAGGTGGATCAAACAGAAGAGAACAGTGCTCCCTCCCCATGGAGCCCTAACACTGCTTCTGGTTGTGCATCTACTGGCAGTGCTTCTCGTGGTAGTACAGAGGGGATTTTTTTGTCAAACCAAGCCAGTTGA	3675	0.4212	MREGLRSRARLGTVSGGEEVVHKKKVVVKSEAVDKGGEGLEVQNSTIEKKGEVALDVKEECGFDLNVSASGEVDLEENESGKGCFSGGGDTVVVEVDKKAKKEQGSNNEVLVGGRVLRSRSKGVKDRRVYYGESEDAVSESDRECSGVETVKVKTECEEAGEFLADSYENEKAKVKKAENGTGNLKRKRGRPPKIKLKVEDQPVHQSPRKRGRPPLASKQNHVVVHNRKEKVVLRKDKKSLTMRRDANVNAIDDADSRKSAGVELEKKEVSSVKKSKFTKALETGNNVVASPVRSNTDNALVSEKSGRNRVKQLVRDQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIAAEDFQILTKVIKKQRQGKVKSVKKGGKGGNKNKGRSGSGAAVGKSVKRKMKRKRSPGDTDSISPNRMPVLVRDHKRHKTQHKLRSGPLVRNAKEIDSETEGYVLYSGKRTLFAWMIDLGTVLLNAKVHYKAPEDKSAALDGKITGDGIHCGCCDKVITISEFEVHAGRKFGDPLQNIYVEEGKSLLQCLLDSWNKQDESERQGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIQKFPSGDWHCIYCCCKFCGSVNGCSDQKDSDDDLTVSKLLTCRLCEQKYHRSCIEANDCNTIDYNDVIFCGNRCQELSERLEMLLGVRHEIEDGYAWTFIRRSDVGIDDSQKKPQMVECNSKLAVALSIMDECFMPYIDHRSGVNLIHSILYNRGSNFNRLNYSGFVTAILERGDEMICAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELGLSSLNVELLVIPAISELRETWTSVFGFEPLESTIKQTVHNTNLLVFPHVDMLQKKISKHDMASHNPIPSEAVNQIAYNCNGAGSSGSDLINYIEIPPCPNTCQINDEATSNESDCHLPEGSVNNVPAVASNINGCRQSTKDDTCEVVCHTGDENPVMDNTKKNVCEDVTDTSGVAGDGQLNTTSCINTEATKVQCVNVSLEVTENLPNHVAVSNEVLSNNKSAEDSEPCGTESITRDSKLSADSIHQDSSIVSDSCKLRSDTDCGQQNIIGTEEKRGEFISVCGSNGRPNGDCASGEGTAATNELLHLPSQDMTNKKPWVKGSSDLPEPDLQVDQTEENSAPSPWSPNTASGCASTGSASRGSTEGIFLSNQAS	1224

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g01566	1224	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	595	670	IPR013083	-
	Viun7g01566	1224	SMART	PHD_3	647	707	IPR001965	-
	Viun7g01566	1224	SMART	PHD_3	605	646	IPR001965	-
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	194	208	-	-
	Viun7g01566	1224	ProSiteProfiles	Zinc finger PHD-type profile.	603	648	IPR019787	-
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	402	417	-	-
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	1179	1224	-	-
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	171	186	-	-
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	1158	1224	-	-
	Viun7g01566	1224	SMART	AT_hook_2	186	198	IPR017956	GO:0003677
	Viun7g01566	1224	SMART	AT_hook_2	208	220	IPR017956	GO:0003677
	Viun7g01566	1224	PANTHER	PHD FINGER PROTEIN 12	272	1086	IPR042163	GO:0003714\|GO:0045892
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	171	221	-	-
	Viun7g01566	1224	SUPERFAMILY	FYVE/PHD zinc finger	595	646	IPR011011	-
	Viun7g01566	1224	CDD	PHD1_AIRE	606	645	-	-
	Viun7g01566	1224	Pfam	Tify domain binding domain	528	577	IPR032308	-
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	402	453	-	-
	Viun7g01566	1224	MobiDBLite	consensus disorder prediction	1067	1096	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g01566	Viun-Chr7	20207457	20215660	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g01566	107	912	PHD Transcription Factor Family	AT5G36670	39.136	0.0	575

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g01566	-		-	gmx:100784172	1542.32