Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01509 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGCTGGACTCAATCACGTAGTCACAACAATCATTTCTCCACAACACCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCGGATGCTGAAGTGATTGCTTTATCACCCAAGACTCTTCTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGAGGACATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCCTATGTTTGCCCGGAACCCTCATGCGTTCACCACAACCCCTCAAGGGCTCTCGGGGACCTCACAGGAATCAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCGGTTCAGTCTGATTGGAAAGCTCACTCCAAAACTTGTGGTACTCGAGAATACAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGATTGTCAGCAAACCAATTGGCCACAAGCACCACAAACCCTTTGGTCCAATCCCTCTTTCTTTTCCCAACCCAACAACACAACAACAACAACATCAACACCACCAACTTCATCAATCCCTGGGACCCAAACCCAAACCCTAACCCTAGCAACCTTCCAACCCTTCACAACACCATCAAACCTGAATCTCACAACTTCCACACCCCCATCTTCAACAACACCAACAACATCTCTTCTCCTTCATTGCTTCTTCATCATCCCCCCAAGACCGTCATAACCTCACCCTACGGTGACCTCCACGTCCGCCCCTCCAACGCTGCCACGTCAGCGCACCTCTCCGCCACTGCGCTGCTCCAGAAAGCTGCAACCTTTGGCGCCGCCGCCATCACGGGCCCCACTCACGTCACTCCGCTCAGCATGCCCGAGTTGGGAACCGGGTCGACTCAGCTGGACTCGGTGCCACCCGAACGCTACATGAACATGAGGGGCCTCACGAATAGCGACGGTCTCACCAGGGACTTTCTTGGCCTCACCAATGGCGACGCGGTGAACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACGGGAGGGAGCGTAGAGTACAACCATTACCACCACCAACCCTACGATCACCATCATAATCATAGTAACTCGCTTTTCAAACCACAGCATGGGTTTGGATTCCTTGGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTGA 1347 0.5011 MFPSVMSNSNSLSEEATVSCGTRIAGLNHVVTTIISPQHPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATSTTNPLVQSLFLFPTQQHNNNNINTTNFINPWDPNPNPNPSNLPTLHNTIKPESHNFHTPIFNNTNNISSPSLLLHHPPKTVITSPYGDLHVRPSNAATSAHLSATALLQKAATFGAAAITGPTHVTPLSMPELGTGSTQLDSVPPERYMNMRGLTNSDGLTRDFLGLTNGDAVNVSIDVKDMLTFTGGSVEYNHYHHQPYDHHHNHSNSLFKPQHGFGFLGTTTGPESWGNCE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01509 448 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Viun7g01509 448 Gene3D Classic Zinc Finger 142 207 - -
Viun7g01509 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Viun7g01509 448 FunFam protein indeterminate-domain 12-like 52 120 - -
Viun7g01509 448 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Viun7g01509 448 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Viun7g01509 448 Gene3D Classic Zinc Finger 52 121 - -
Viun7g01509 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 405 IPR031140 -
Viun7g01509 448 SMART c2h2final6 73 95 IPR013087 -
Viun7g01509 448 SMART c2h2final6 114 144 IPR013087 -
Viun7g01509 448 SMART c2h2final6 149 169 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01509 Viun-Chr7 19575072 19579311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01509 17 417 IDZ Gene Family AT4G02670 51.389 3.38e-125 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g01509 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01509 K25870 - gmx:100780056 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01509 7 19575072 19579311 Viun1g02038 1 31744399 31748446 PCT