Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01479 ATGACGATGAAGAGGCTTGTGAGAGTGAAGAGGGATGCAATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAGGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGACAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAGGCAGCTGTAGCTATCCCTTCAGTACTATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACAATCAACCATGACAGGAAGAAGAACAAAACCAACAAGAAAGGCACTAGGCCTGCAGGGCTCTGGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCATGCTCACCTGACACTTCAAACAAGTCTGCAAAGAGTGCGGGACAGAGTTTGTCACCTTGTAAAAATAGTCAATCCATATGCAATAGAGGACTGCAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAACTATTTAGCAGAGGCTGCAAGTAGGAGCAAGTCTTTCAAGTCTAATGTGCAAGCATCTAATGCTAAACCAGAATCCGTGAAAGTAAATGACACTGATACTAAAGTGCTGAAAGCCAAAATTAAGGAAAATAAGCGCAAGGCAAAAGTTGCAGATGAAAAGATTAGCACTGATCATGTCTCTCCAGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACATGCTTTTGGAGAATCTAGAATATCCCCTCAGGCTGTTCTGGATGCTAATGACAGTAACCTCTTATGGAATGACTCAATTTGGTTCTCCTTAGCAGCTTCCGAAAACCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCTGTCTCATTTATCCAAAAATTGTTAATGAAGAAACTGGGCCTGAAAAGTGAGGATGAGGTTGAGATCAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGCCACAGAATTCCTGCAACCATAGGATCCTCAGGGAAAGATTTTGTGATGATCCTAACCTATGGTCGGAAGGTCCAACAACCTTCATCATGA 1296 0.4159 MTMKRLVRVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAAVAIPSVLLPARRKERSLSSLVVSTPRVSTQSTMTGRRTKPTRKALGLQGSGFSVEKLIKKEEELLEDRQDSSCSPDTSNKSAKSAGQSLSPCKNSQSICNRGLQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQASNAKPESVKVNDTDTKVLKAKIKENKRKAKVADEKISTDHVSPDTAKPNKLRRVRPKKEHAFGESRISPQAVLDANDSNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVQQPSS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01479 431 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Viun7g01479 431 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Viun7g01479 431 CDD RING-HC_PCGF 18 61 - -
Viun7g01479 431 SUPERFAMILY RING/U-box 15 85 - -
Viun7g01479 431 MobiDBLite consensus disorder prediction 167 191 - -
Viun7g01479 431 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Viun7g01479 431 MobiDBLite consensus disorder prediction 115 139 - -
Viun7g01479 431 MobiDBLite consensus disorder prediction 115 134 - -
Viun7g01479 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 102 IPR013083 -
Viun7g01479 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 427 IPR044807 GO:0004842
Viun7g01479 431 SMART ring_2 20 60 IPR001841 -
Viun7g01479 431 MobiDBLite consensus disorder prediction 161 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01479 Viun-Chr7 19206628 19212112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01479 1 348 C3H Transcription Factor Family AT2G30580 47.863 2.18e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01479 K16277 - gmx:100778462 739.569