Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01463 ATGAGTAAAGTAATCTTAGAATTTTCCTTTGATCCAGAGTCTCTAGATTCAGAAAGCCAGGAATTTCCTTTGAATTTAGACATCATGGTGGATGTACTTCAAGATGGAGAAAGCGAAGTGGAAGAGGAAGAGGAAGAAGAAGAAGTAATGGAACTGAATGCAATAATGATTCCAGCATCTGAAGAAGCCATTGATTCTCTCATTAAGTTCACAACTTTACCTTCTCTAAGAATGGAAACTGAGAAGTGCAGCATTTGCATGGAAAATTTTCGTTTAAGAGAGAATGAAGAAACTGTTAAGTTATCGTCGATGTCTTATGATCATGTTTTTCATCATTTGTGTATTGTAAAGTGGTTGAAGACAAGTCATACTTGTCCCTTATGTCGATACCCTGTGTGTATTCATAAGATTTGA 414 0.3575 MSKVILEFSFDPESLDSESQEFPLNLDIMVDVLQDGESEVEEEEEEEEVMELNAIMIPASEEAIDSLIKFTTLPSLRMETEKCSICMENFRLRENEETVKLSSMSYDHVFHHLCIVKWLKTSHTCPLCRYPVCIHKI 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01463 137 Pfam Ring finger domain 82 129 IPR001841 -
Viun7g01463 137 SUPERFAMILY RING/U-box 63 134 - -
Viun7g01463 137 ProSiteProfiles Zinc finger RING-type profile. 83 129 IPR001841 -
Viun7g01463 137 Coils Coil 26 53 - -
Viun7g01463 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 134 IPR013083 -
Viun7g01463 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 38 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01463 Viun-Chr7 18911736 18912149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01463 68 129 C3H Transcription Factor Family AT4G12190 48.387 1.20e-13 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01463 - - pvu:PHAVU_009G017600g 160.614