Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01409 ATGCATATAGGTCAGACAGATACAACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCATGTCAAACAATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCGGTGCTTGATGACGTTATGGATCACCAAATTCCATCAGATGTAAATCTATGTAAAGAGTGTGAGGAATTGGATAAGCGAGTTAATGAAGCTAGAGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAGGATTCACAGTATTCTACATGGTGGTACATTGTTGATCAAATTACAGAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGTATCAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAACTGGCAATGGTCTATATAGAAGAAGCACTGAGAAATCAAAGAGACAATATTGAACCAAGCAAGGAGCATCTGAAGGAAATTATTGAGTTACTTAAATTGACACCAAATCAGGAGCTCTTAAAAGAAAGCATTGCTGTGGAAAAGGAAAGGGTGAACATTGAAGCCAATAAAATGATAGCGGACATAGAAGAAATTAATGAAATTGTGAATCTTGTCCGTAGTTTGCGCGATTATATGATCAAAACTGAGTGCCCTTTAGTCAAGAGTGGTCTCTCAATCCCTCCATACTTCCTTTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACAGTTTGTCCCAAAACTCGTCAGAGACTTACTCATACAAATCTCATTCCCAATTACACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTTAAACTTTCTGGTATTTCTGACCACAAAAAATCTGCCTGTGTCACGTCCCCCATGGATAATTTATTGCCTCAAGATGATTGCCGTGTTGGGTCTCTCTCTAGTAGCAATTCCATTTCAAGATCATCTCTTCAAACTGAAAATGCATTTGAAAAGCAAAAGGTTGATAACTCTTTCAGATTATGTGGAGAATACAATGGATGCCAGAGTGGAGCAGCCGAAAGGTGTGAGCAAGAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCCATTTCTAGTACTGATTGTGCAGTTTCAAAAGAGGTGTCAGGGATATCCAACAGGCATCAAAATGTGAAGGTGCTCTCCGGAGAAATCAAAAACACGTGTCCTTCTCCTGGTAACAAACAATCAGGGATATCTCCTTGGATATCTGGAAAAACATTTCAAAATCCTGGATCAAATGTGGGATTGTTGGAGAATGGAAATCATAATGATAATAATAATAGTGGTAGTCTGTCAAGATATGATTCACATTCTGTTTCAAACTCCGGGTCAGATGAATTGACCACCACATCTCATGTCTTTAGATTGATTGAAGACCTTCACAGTCAATCAGTTGAAACACAGACTACTGCTGCTGAAGAATTGAGGCTCCTTACAAAGCATAACCAGGAAAACCGTGTCATTGTAGGGCAGTGTGGGGCTTCCATGCCTTTGCTTTCATTGCTACATTCAGACGTGAAGGTAACACAAGAGCATGCTGTGACAGCTCTACTGAACTTGTCAATTAATGAAGAGAACAAGACTTTCATCATGGAAGCAGGAGCCATAGAACCTCTCATCCATGTTTTGAAGACAGGAAATGATAGTGCCAAGGCGAATTCTGCGGCAACTCTATTCAGCCTCTCAGTACTTGAGAACAATAAGGCAAGAATTGGCCGTTCAAGAGCTGTTAAAGCTTTGGTTGATCTTCTTGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTTTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCAGTGAAATTTCTGGTTCGGTTATTGGACGAAGCTAGTGGAATGGTTGACAAGTCTGTTGCTCTTCTGTCAAACCTGTCAACCATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGTATCCCCTTACTTGTTGAAGTTGTTGAGTCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTGTGCCTTCATAGTACTAAGTTCTGTAATCTAGTTTTGCAAGAAGGAGCTGTCCCTCCCCTAGTTGCATTATCAGTATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGCAATCAGCGGGAAACAGCTGCTTCTGGGAAGGGAAAATCATGA 2370 0.4076 MHIGQTDTTSVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVGVLKRLKPVLDDVMDHQIPSDVNLCKECEELDKRVNEARDFIEKWSPKMSRIHSILHGGTLLIKLQSTSLDICHMIVRSLQSPPSVSVLANLQHYIQELQCLKKELAMVYIEEALRNQRDNIEPSKEHLKEIIELLKLTPNQELLKESIAVEKERVNIEANKMIADIEEINEIVNLVRSLRDYMIKTECPLVKSGLSIPPYFLCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNVKLSGISDHKKSACVTSPMDNLLPQDDCRVGSLSSSNSISRSSLQTENAFEKQKVDNSFRLCGEYNGCQSGAAERCEQESPYTHSRSESFSSSISSTDCAVSKEVSGISNRHQNVKVLSGEIKNTCPSPGNKQSGISPWISGKTFQNPGSNVGLLENGNHNDNNNSGSLSRYDSHSVSNSGSDELTTTSHVFRLIEDLHSQSVETQTTAAEELRLLTKHNQENRVIVGQCGASMPLLSLLHSDVKVTQEHAVTALLNLSINEENKTFIMEAGAIEPLIHVLKTGNDSAKANSAATLFSLSVLENNKARIGRSRAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLLDEASGMVDKSVALLSNLSTIPEGRLEIARERGIPLLVEVVESGSQRGKENAASILLQLCLHSTKFCNLVLQEGAVPPLVALSVSGTPRAKEKAQQLLSHFRNQRETAASGKGKS 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01409 789 Pfam Armadillo/beta-catenin-like repeat 617 653 IPR000225 GO:0005515
Viun7g01409 789 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515
Viun7g01409 789 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Viun7g01409 789 MobiDBLite consensus disorder prediction 433 495 - -
Viun7g01409 789 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Viun7g01409 789 SUPERFAMILY RING/U-box 240 315 - -
Viun7g01409 789 SMART arm_5 614 654 IPR000225 GO:0005515
Viun7g01409 789 SMART arm_5 573 613 IPR000225 GO:0005515
Viun7g01409 789 SMART arm_5 532 572 IPR000225 GO:0005515
Viun7g01409 789 SMART arm_5 695 735 IPR000225 GO:0005515
Viun7g01409 789 SMART arm_5 655 694 IPR000225 GO:0005515
Viun7g01409 789 FunFam RING-type E3 ubiquitin transferase 486 781 - -
Viun7g01409 789 SUPERFAMILY ARM repeat 505 775 IPR016024 -
Viun7g01409 789 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Viun7g01409 789 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Viun7g01409 789 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 666 707 IPR000225 GO:0005515
Viun7g01409 789 Coils Coil 184 204 - -
Viun7g01409 789 Gene3D - 481 784 IPR011989 -
Viun7g01409 789 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Viun7g01409 789 CDD RING-Ubox_PUB 242 294 IPR045210 -
Viun7g01409 789 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Viun7g01409 789 PANTHER U BOX DOMAIN-CONTAINING 34 776 - -
Viun7g01409 789 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 667 IPR000225 GO:0005515
Viun7g01409 789 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01409 Viun-Chr7 17883855 17888793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01409 7 789 U-box Gene Family AT3G54790 54.156 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01409 - - gmx:100800949 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01409 7 17883855 17888793 Viun7g01409 7 17883855 17888793 ECH