Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01404 ATGCCGTCGCTCCTCTCTCCGGGGAGAATCCACTGTCTGGAGGTGGAGAATTTCAAGTCCTACAAGGGCTTCCAAATGATCGGCCCCTTCTACGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGTAAGTCCAACCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGCGGTGCGCAGCTCAAGGACCTCATCTATGCCTTCGACGACCGCGAGAAAGACCAGAAGGGTCGCCGAGCCTTCGTCCGCCTTGTCTACCACCTCGCCAACTCCACTGAGATTCGATTCACCCGCACCATCACTGGCGCCGGCTCCAGCGAGTACCGCATCGACGACACCCTCGTCAATTGGGACACCTACAACAACAGACTCAAGTCCCTCGGCATCCTCATCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTTGAGTCCATTGCGTCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAGCAGATATCTGGCTCTGACGAGTGCAAGAGGGACTATGAGCTGTTTGAAGAGGAAAAAGGCGCTGCTGAAGAAAAATCAGCACTTGTTTATCAAAAGAAGAAGACTGTTGTTATGGAAAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCCGCCTCCAACAAGAACTGAAATCTATGAAGAGAGAGCATTTCTTGTGGCAGTTGTTTAATATACATAATGATTATGTTAAAACAATTAAGGATCTTGAAGATGAGGAGAGAAGTCGTGAAGGTGTTGTTAAAGAGCTGGAAAATTTTGAAAATGAAGCTAGTAAAAGAAAAGAGCAGGCCAAATATCTCAAAGAGATTACGCTGCGGGAAAAGAGAATTAATGAGAAAAACAGCAGACTCGATAAGAGTCAGCCTGAGCTTCTGAAGTTAAAGGAGGAAATGACCCGTATTACTTCAAAAATTAAAAAAGGGAAGAAAGAACTTGATAAAAAAAAGGTTGAACGGACGAAGCATGATGCTGATATTGCATTACTACAGAATGGCATCCAGGATCTTACAGCTAAAATGGCAGACCTTCAGGAAAAGGGACGGGATGTTGATGATGAGCTTGATTTGCAAGGCAATGATTTGGATGAGTATTTTCGAATTAAAGAGGAGGCTGGGATGAAAACTGCAAAGCTTAGAGAAGAAAAGGAGCTTCTAGATAGGAAACTAAATGCTGATACCGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAACTCACAGGAAGAACAGATGCGAGCAAGGCTTGAAAAGATTCTTGATAATTCTGCAAAAAATAAAACTGGCCTTGAGAACTTGAAAAAGGAACTACGTGCGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAGGTTAAAAATCGGTGAAGTAGAAAATCAACTTCGTGAATTGAGGGCTGATAGATATGAAAGTGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAAACTCTGAAGCGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCAATGGGTAAATTTATGGATGCAGTTGTAGTTGACAAGGAGTCAACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGGTCTTTGATGTGATTCAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAACACTCTTGTTTGTGATGATCTTGAAGAGGCCAAAATTTTAAGCTGGAGTGGGGAGAGGTTTAAAGTTGTAACTGTGGATGGAATTCTGCTCACAAAATCCGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAAGCAGAGTTGGAATCGCTAGGATCAATAAGGGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAAAAGATTCAATATGCCGAAATTGAGAAGCGAAGCATTGAAGATAAACTTTCAAATCTGAGCCACGAAAAGAAGACAATCAAAGAAAGAATTGAATGTATCAGTCCAGAGCTGAAGAAGTTAAATGATGCTGTTAACAAGAACAATGCAGAAATACGCAAGCTTGAGAGGAGAATAAATGAAATTACTGATAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAACAGACTCAAGGCTGCTCAAAATATAGCGGAGGAGAGGCTGAACTTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAACAAAATCGGGACATGAGTTCGCGAATTCTAGAACTGGAAGCTTCTATAAGTGCTTTAGAGAAAGATTTAAAACGTGTACAGGACAGAGAGGCTGCAGCGAAGTTAGCAGCTGAGAAGTCTACTGAAGAGGTTAATCAGTTAAAGGAAGAAGTTAAAGAGTGGAAATCCAAGTCAGAAGAATGTGAGAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGGCTGATACATTCTAAGGAGGCACAGATCGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAGTGTGAACTCGAACAGATTAACCTCCCTATCATACCAGATCCCATGGATACTGATAACTCAGTACCAGGTCCACATTTTGATTTTGATCAACTAAGTAGGTCACTGAAAGATAAGAGGCACTCAGACAGGGATAAAATTGAGGTGGACTTTAAGCAAAAAATTGATGCCTTGGTATCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTTTTGGAAAAGGAAAGAGCTGTAACTGAGGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAAAGATTTAATGAGGTTAAGCAGAGAAGGTACCAATTGTTCATGGATGCTTTTAACCATATATCTGGCAATATAGATAAAATTTACAAACAACTTACAAAGAGCAATACACATCCACTGGGGGGAACAGCATATCTAAACTTGGAAAATGACGATGATCCATTTCTTCATGGCATTAAGTACACTGCTATGCCCCCAACGAAGCGTTTCCGTGATATGGAGCAACTATCTGGTGGGGAAAAGACAGTTGCAGCACTAGCATTGTTATTCTCCATCCACAGTTACAAGCCTTCACCATTTTTTATATTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCATGCGAAGGGGCAAGGACTAACCAGGATGCTGATGGTGGAAGTGGTTTTCAGAGTATTGTGATATCACTGAAAGACACTTTTTATGACAAAGCTGAAGCGCTAGTTGGTGTTTACAGAGATTCTGAAAGAGGCTGTTCGAGAACCCTCACATTTGATCTGACCAAATACCGGGAGTCCTAA 3651 0.4234 MPSLLSPGRIHCLEVENFKSYKGFQMIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKDQKGRRAFVRLVYHLANSTEIRFTRTITGAGSSEYRIDDTLVNWDTYNNRLKSLGILIKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYELFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQQELKSMKREHFLWQLFNIHNDYVKTIKDLEDEERSREGVVKELENFENEASKRKXEQAKYLKEITLREKRINEKNSRLDKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERTKHDADIALLQNGIQDLTAKMADLQEKGRDVDDELDLQGNDLDEYFRIKEEAGMKTAKLREEKELLDRKLNADTEAQKNLEENLQQLRNRESELNSQEEQMRARLEKILDNSAKNKTGLENLKKELRAMQDKHRDSKKKYENLRLKIGEVENQLRELRADRYESERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDKESTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLVFDVIQFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYEAELESLGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSHEKKTIKERIECISPELKKLNDAVNKNNAEIRKLERRINEITDRIYRDFSKSVGVANIREYEENRLKAAQNIAEERLNLSSQLSKLKYQLEYEQNRDMSSRILELEASISALEKDLKRVQDREAAAKLAAEKSTEEVNQLKEEVKEWKSKSEECEKEIQEWKKKASAATTNISKLNRLIHSKEAQIDQLNVQKQEILEKCELEQINLPIIPDPMDTDNSVPGPHFDFDQLSRSLKDKRHSDRDKIEVDFKQKIDALVSEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEREKTQRFNEVKQRRYQLFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTNQDADGGSGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01404 1217 Coils Coil 829 940 - -
Viun7g01404 1217 Coils Coil 342 369 - -
Viun7g01404 1217 Coils Coil 170 190 - -
Viun7g01404 1217 Coils Coil 278 285 - -
Viun7g01404 1217 CDD ABC_SMC1_euk 1096 1211 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Viun7g01404 1217 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Viun7g01404 1217 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Viun7g01404 1217 Gene3D - 452 585 - -
Viun7g01404 1217 Coils Coil 398 446 - -
Viun7g01404 1217 Coils Coil 454 502 - -
Viun7g01404 1217 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Viun7g01404 1217 Coils Coil 675 695 - -
Viun7g01404 1217 Coils Coil 198 231 - -
Viun7g01404 1217 Pfam SMC proteins Flexible Hinge Domain 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Viun7g01404 1217 PIRSF SMC 8 1214 IPR024704 GO:0005524|GO:0016887
Viun7g01404 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 231 IPR027417 -
Viun7g01404 1217 Coils Coil 751 778 - -
Viun7g01404 1217 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Viun7g01404 1217 Coils Coil 1007 1027 - -
Viun7g01404 1217 Coils Coil 307 327 - -
Viun7g01404 1217 SUPERFAMILY Smc hinge domain 481 682 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Viun7g01404 1217 Coils Coil 792 812 - -
Viun7g01404 1217 Coils Coil 251 276 - -
Viun7g01404 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1200 IPR027417 -
Viun7g01404 1217 Gene3D - 8 231 IPR027417 -
Viun7g01404 1217 Gene3D - 900 1216 IPR027417 -
Viun7g01404 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1217 - -
Viun7g01404 1217 Coils Coil 709 743 - -
Viun7g01404 1217 Gene3D - 586 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01404 Viun-Chr7 17786330 17801176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01404 8 114 Structural Maintenance of Chromosomes family AT5G61460 33.333 3.51e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01404 K06636 - gmx:100785315 2154.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01404 7 17786330 17801176 Viun7g01404 7 17786330 17801176 ECH