Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01400 ATGGGAAGAATTCCTTGCTGTGAGAGATTGGGATTGAACAAAGGGTTTTGGAGTCCTGAGGAAGATCGCATTCTCATCAATCATATCAACACATATGGTCACAAAAATTGGCATGCTCTACCCAGACAAGCTGGGCTTTCGAGATGTGGAAAGAGTTGCAGACTCAGGTGGATAAATTATCTTAGGCCAGATATTAAACGAGGCAATTTTACAAGAGAAGAAGAAGACAAGATAATCCAGTTGCATGAAAAGCTGGGAAACAGATGGTCAGCCATAGCAGGAAAGTTACCAGGTAGAACAGACAACGAAATAAAGAACGTGTGGAACACCCACTTGAAGAAGAGGGTGTCCCAACAAGACAAAGACACGAAACAAAAGCTGTCCTTGGTCAGCACACAAATTCCCAAACAAGAACAACAACAACCCGTGACAGAGGAAAAAAAGGCACTGTCATCTCCACAGTGTGCAAGCACTGACGTGTCAACCCTCACCACTTCTACCACCAGTGACAGCAGAGACCACAACTGCGCTACTGCTATTGATCATCAACATCGCTTGCCCGTGAAGACTGAATCGCTCGATGATGATTTCTGGTCTCAAGTTCTCTCACCTGGTAACGCCGCTCACCGGGACTTCCAATCTTCACTCTCTCCGTTGTTCACTTCCAATGGGGTGCATGCGTCAAGTGCTTACGATAATGTCAACTTTTGGTACGATGTGTACATGGGAGAACAAGAACTACGAGACTTCTGA 753 0.4542 MGRIPCCERLGLNKGFWSPEEDRILINHINTYGHKNWHALPRQAGLSRCGKSCRLRWINYLRPDIKRGNFTREEEDKIIQLHEKLGNRWSAIAGKLPGRTDNEIKNVWNTHLKKRVSQQDKDTKQKLSLVSTQIPKQEQQQPVTEEKKALSSPQCASTDVSTLTTSTTSDSRDHNCATAIDHQHRLPVKTESLDDDFWSQVLSPGNAAHRDFQSSLSPLFTSNGVHASSAYDNVNFWYDVYMGEQELRDF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01400 250 CDD SANT 69 112 IPR001005 -
Viun7g01400 250 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun7g01400 250 Gene3D - 68 150 - -
Viun7g01400 250 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun7g01400 250 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 203 - -
Viun7g01400 250 FunFam MYB-related transcription factor 13 66 - -
Viun7g01400 250 CDD SANT 17 61 IPR001005 -
Viun7g01400 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun7g01400 250 SMART sant 66 114 IPR001005 -
Viun7g01400 250 SMART sant 13 63 IPR001005 -
Viun7g01400 250 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun7g01400 250 MobiDBLite consensus disorder prediction 123 155 - -
Viun7g01400 250 Gene3D - 14 66 - -
Viun7g01400 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun7g01400 250 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun7g01400 250 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Viun7g01400 250 MobiDBLite consensus disorder prediction 115 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01400 Viun-Chr7 17753683 17755529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01400 1 250 MYB Transcription Factor Family AT2G31180 45.349 5.72e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g01400 Myb_DNA-binding 8.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01400 K09422 - gmx:106794951 297.745