Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01394 ATGGATTTTGATTCATCTTTGTTCCAGTACCAAAGCCTTGTAAATTCTTCTTTGTGTGCAGAACCATTCCACTGGGAGGAGTTTTTTGTGTTCAATGAAGAAAACAGCAGCAATATTCCCCTCACCTTGAATGAGCAGTCACAAATGAAGGAATCATCCTCATCAGATTATTCAAACTGTTCAGGTTGTTTGATGAGCAGTGATCAGTCACAGGTGGAAGTGTCCTCCAATGTAAGTGATGCAGGTGAAGGGAAAGTGGTGAAAGAAGTAGAAGTCCCAAAGGAGAAAAGACCCTTCAGGGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATAAGAGACTCCACAAGAAATGGTGTTAGAGTGTGGATAGGCACATTTGACACAGCAGAGGCTGCAGCACTGGCGTATGACCAAGCAGCTTTCTCCACCAGAGGTTCCATGGCAGTGCTGAACTTCCCAGAAGAAGTTGTGAGAGAATCACTCAAAGACATGCCCAACAACCCATGGGAAGATGGTTCCTCACCAGTGTTGGCACTCAAGAAGAAACACACCATGAGAAGAAATTCCAAACCCACAAACAAAAAACCCAAAAGGGACCACCACCATGGAAATGTGCTTTCCCAGAATGTCTTGGTGCTCGAGGATTTGGGCTCTGACTACTTGGAACAGCTTCTCAGCTTGACTTCTTCTTCTTCTGCTGATCATGTGTTTTGCTAG 726 0.4545 MDFDSSLFQYQSLVNSSLCAEPFHWEEFFVFNEENSSNIPLTLNEQSQMKESSSSDYSNCSGCLMSSDQSQVEVSSNVSDAGEGKVVKEVEVPKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSMAVLNFPEEVVRESLKDMPNNPWEDGSSPVLALKKKHTMRRNSKPTNKKPKRDHHHGNVLSQNVLVLEDLGSDYLEQLLSLTSSSSADHVFC 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01394 241 MobiDBLite consensus disorder prediction 166 207 - -
Viun7g01394 241 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Viun7g01394 241 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Viun7g01394 241 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Viun7g01394 241 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Viun7g01394 241 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Viun7g01394 241 ProSiteProfiles AP2/ERF domain profile. 98 156 IPR001471 GO:0003700|GO:0006355
Viun7g01394 241 FunFam Ethylene-responsive transcription factor 2 96 157 - -
Viun7g01394 241 SMART rav1_2 98 162 IPR001471 GO:0003700|GO:0006355
Viun7g01394 241 MobiDBLite consensus disorder prediction 183 204 - -
Viun7g01394 241 PANTHER DNA-BINDING DOMAIN 55 231 IPR044808 GO:0003700|GO:0009873
Viun7g01394 241 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01394 Viun-Chr7 17589359 17590416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01394 87 228 AP2-EREBP Transcription Factor Family AT3G23240 62.937 1.77e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun7g01394 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01394 K14516 - gmx:100780775 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01394 7 17589359 17590416 Viun7g01394 7 17589359 17590416 ECH
Viun1g02101 1 32353074 32354057 Viun7g01394 7 17589359 17590416 PCT
Viun6g01685 6 24499173 24499908 Viun7g01394 7 17589359 17590416 PCT
Viun7g01394 7 17589359 17590416 Viun1g02098 1 32314030 32314781 PCT