Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01393 ATGGAGGGAGGAAGATCTTCGGGTTCTAATGGAAATGGTGAGGCTCGGTACAGAGGGATTCGGAGAAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGGAAAGGGACTCGGATATGGCTTGGAACCTTCGAAACTGCAGAACAAGCTGCACGAGCTTATGATGCTGCTGCGTTTCATTTTCGTGGCCACAGAGCCATTCTCAACTTCCCAAATGAGTATCAGTCTTCTAATCCAAACTCTTCTTTGCCTATGCCTTTAACAACACTTCCTCCTCCTTCTTCCTCTTCCTCTTCTTCTTCTTCTTCCTATTCTTCTTACTCTATTGATAACATTGCGGGACCTGGTTTTTCTGGGGAAATGATGCAAGGTGATGATACTTTTGAGTTGGAGTACTTGGACAATAAGTTGCTTGAAGAACTCCTTCAGATGCAAGATAACCGACATCTCTTCAAGTGA 468 0.4509 MEGGRSSGSNGNGEARYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEQAARAYDAAAFHFRGHRAILNFPNEYQSSNPNSSLPMPLTTLPPPSSSSSSSSSSYSSYSIDNIAGPGFSGEMMQGDDTFELEYLDNKLLEELLQMQDNRHLFK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01393 155 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Viun7g01393 155 PANTHER DNA-BINDING DOMAIN 12 144 IPR044808 GO:0003700|GO:0009873
Viun7g01393 155 MobiDBLite consensus disorder prediction 1 20 - -
Viun7g01393 155 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Viun7g01393 155 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Viun7g01393 155 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Viun7g01393 155 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Viun7g01393 155 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Viun7g01393 155 MobiDBLite consensus disorder prediction 95 109 - -
Viun7g01393 155 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Viun7g01393 155 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Viun7g01393 155 MobiDBLite consensus disorder prediction 74 109 - -
Viun7g01393 155 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01393 Viun-Chr7 17542427 17543299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01393 12 152 AP2-EREBP Transcription Factor Family AT3G23230 54.610 2.83e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g01393 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01393 - - gmx:100779173 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02100 1 32337991 32338657 Viun7g01393 7 17542427 17543299 PCT