Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01392 ATGACTTCCCCTTTCATCCACAACCAAGACTGGGACATGTCGCAGGAGCCCTCAGAAATTTTGTTCAATTCATTGCCAAGAAATGCTGTTCTTGACCCTATTCAAGATTCTCTTTCCTTCGACATGGTTGATTCTTCCACTGCACCACCACAAGGAAATCACAACCACACACAAGAAGTGAAGAAGAAGGAGAGGTCGTACAAAGGTGTGAGGAAGAGGCCATGGGGAAAATACGCAGCAGAGATCAGAGACACAACGAGGAATGGAAGAAGGGTTTGGCTTGGAACCTTCGAGAGTGCAGAAGCTGCTGCTTTGGCTTATGACCAAGCTGCATTCTCCATGAGAGGCCACAGTGCTGTCCTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATACACATGCTTCACTGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCTTCAAAACCTAAAAAGTGTAAAGGGAAAGACCCCTCTCAGGATCCAACACAAAGTCTGGTGGTGTTAGAGGATTTGGGAGTTGACTATTTAGAGCATCTTTTAAGCATATCCGATCAAAGTGAAAGCCCTAGCTGCTTCCACTAA 624 0.4535 MTSPFIHNQDWDMSQEPSEILFNSLPRNAVLDPIQDSLSFDMVDSSTAPPQGNHNHTQEVKKKERSYKGVRKRPWGKYAAEIRDTTRNGRRVWLGTFESAEAAALAYDQAAFSMRGHSAVLNFPVKRVKESLQEIQYTCFTGSSPALALKERHCIQRKLSSKPKKCKGKDPSQDPTQSLVVLEDLGVDYLEHLLSISDQSESPSCFH 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01392 207 Gene3D AP2/ERF domain 65 126 IPR036955 GO:0003700|GO:0006355
Viun7g01392 207 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Viun7g01392 207 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Viun7g01392 207 FunFam Ethylene-responsive transcription factor 2 65 126 - -
Viun7g01392 207 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Viun7g01392 207 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Viun7g01392 207 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Viun7g01392 207 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
Viun7g01392 207 PANTHER DNA-BINDING DOMAIN 51 198 IPR044808 GO:0003700|GO:0009873
Viun7g01392 207 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Viun7g01392 207 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01392 Viun-Chr7 17453423 17454786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01392 61 200 AP2-EREBP Transcription Factor Family AT3G23240 60.714 1.59e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g01392 AP2 8.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01392 K14516 - gmx:100812017 317.005