Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01391 ATGTCTTCCCCTTTCTTAGAGAGTCCATATTGGGACATGATGATGCAGGAGCCTTCAGAAATATTGTTCCAATCGTTGTCAAGCAATGATGTTCTTGACCCTCTGCACGATTCTCTTTCGTTCGACATGGTTGACTTCTCAACGGCAGCAACAGAAGGAAAGAAAGTGGTGGTGGAGTCTGAAGTGAAGAAAAGGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCTGCAGAAATCAGAGACACCACAAGGAGTGGGAGAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGAAGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTCCCTGTCAAAAGGGTTAAAGAGTCTTTGCAAGAGATCCAATATACCTGCTTCAATGGCTCTTCTCCTGCTCTTGCACTCAAGGCCAGGCACTGCAAGCAAAAACACTTGTCAAAACCCAAAAACTCTAAAGGGAAAGACAAATCAAACCCATGTCTAGTGGTGTTAGAAGATTTGGGAGTTGATTATCTAGAGCAACTTCTAAGCATATCAGAACAATCTGCAAGCCCTACCTACTTCAACTAA 618 0.4385 MSSPFLESPYWDMMMQEPSEILFQSLSSNDVLDPLHDSLSFDMVDFSTAATEGKKVVVESEVKKRERSYIGVRKRPWGKFAAEIRDTTRSGRRVWLGTFESAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYTCFNGSSPALALKARHCKQKHLSKPKNSKGKDKSNPCLVVLEDLGVDYLEQLLSISEQSASPTYFN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01391 205 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Viun7g01391 205 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Viun7g01391 205 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Viun7g01391 205 Coils Coil 205 205 - -
Viun7g01391 205 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Viun7g01391 205 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Viun7g01391 205 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Viun7g01391 205 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Viun7g01391 205 FunFam Ethylene-responsive transcription factor 2 67 128 - -
Viun7g01391 205 PANTHER DNA-BINDING DOMAIN 52 196 IPR044808 GO:0003700|GO:0009873
Viun7g01391 205 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01391 Viun-Chr7 17391779 17393670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01391 63 200 AP2-EREBP Transcription Factor Family AT3G23240 59.859 1.63e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g01391 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01391 K14516 - gmx:100812017 275.789