Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01390 ATGACTTCCCCTTTCTTCCAGAACCTATCAGATTGGGATATGTTGCAGGATCCTTCAGAAATTTTGTTCCAATCATTGTCAAGCAATAATGCTGTTCTTGACCCTATTCAAGATTCTCTTTCCTTTGATATGGTTGATTTCTCCACGGCACCAGCAGAAGGAAATCAGAAACAATTGGTGCGGAAGTGTGAAGAACTGCAGAATAAGGAGAAGTCTTACATCGGTGTGAGGAAACGGCCTTGGGGGAAATATGCAGCAGAGATCAGAGACACAACCAGGAATGGCTCAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAGGCTGCTGCTTTAGCCTATGACCAAGCTGCATTTTCCATGAGAGGCCAAAATGCTGTACTCAATTTTCCAGTGAAAACGGTGAAAGAGTCTTTGCAAGAGATTCAATATAGCTGCAGCAATGGATCTTCTCCCGCACTTGCACTCAAGGAGAGGAACTTCATCCAGAGAAAATTGTCATCAAGGGCCAGAAAATGTAAAGGGAAAGAGACATCAGAAGCAGCAACACCAGGTGTTGTGGTGTTAGAAGATTTAGGAGTTGACTATCTAGAGCAACTTCTAAGCATATCAGATCAAAGTGCAAGCCCTAGCTACTTCAATTAA 642 0.4346 MTSPFFQNLSDWDMLQDPSEILFQSLSSNNAVLDPIQDSLSFDMVDFSTAPAEGNQKQLVRKCEELQNKEKSYIGVRKRPWGKYAAEIRDTTRNGSRVWLGTFDSAEAAALAYDQAAFSMRGQNAVLNFPVKTVKESLQEIQYSCSNGSSPALALKERNFIQRKLSSRARKCKGKETSEAATPGVVVLEDLGVDYLEQLLSISDQSASPSYFN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01390 213 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Viun7g01390 213 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Viun7g01390 213 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Viun7g01390 213 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Viun7g01390 213 FunFam Ethylene-responsive transcription factor 2 71 132 - -
Viun7g01390 213 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Viun7g01390 213 PANTHER DNA-BINDING DOMAIN 60 204 IPR044808 GO:0003700|GO:0009873
Viun7g01390 213 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677
Viun7g01390 213 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Viun7g01390 213 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01390 Viun-Chr7 17363707 17364348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01390 70 208 AP2-EREBP Transcription Factor Family AT3G23240 56.835 5.90e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g01390 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01390 K14516 - gmx:100811486 332.798