Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01389 ATGACAACTTTCCCTTTGTTTCAGAAGCCAGATAGGAAGATGTTTGAGGAGCCTTCAGAAATTTTGTTGGAATCATTGTCAAGCAATCATGTTGTGGACACAGTCCATGATTCGCTTTCATTCGACATGGTTGAGGAATGTACAACAGAAGAAAACACCAACAAGGCAAAGCAATTGGTGGCGAAGAGTGAAGAAGTGAAGAAGAAGGAGAGGTCGTACAAAGGTGTGAGGAAGAGGCCATGGGGAAAATACGCAGCAGAGATCAGAGACACAACGAGGAATGGAAGAAGGGTTTGGCTTGGAACCTTCGAGAGTGCAGAAGCTGCTGCTTTGGCTTATGACCAAGCTGCATTCTCCATGAGAGGCCACAGTGCTGTCCTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATACACATGCTTCACTGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCTTCAAAACCTAAAAAGTGTAAAGGGAAAGACCCCTCTCAGGATCCAACACAAAGTCTGGTGGTGTTAGAGTGTCTGGGAGTTGAATATCTTGAGCAACTTCTCAGCATATCAGATCAAAGTGTAACTTTGTAA 630 0.4413 MTTFPLFQKPDRKMFEEPSEILLESLSSNHVVDTVHDSLSFDMVEECTTEENTNKAKQLVAKSEEVKKKERSYKGVRKRPWGKYAAEIRDTTRNGRRVWLGTFESAEAAALAYDQAAFSMRGHSAVLNFPVKRVKESLQEIQYTCFTGSSPALALKERHCIQRKLSSKPKKCKGKDPSQDPTQSLVVLECLGVEYLEQLLSISDQSVTL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01389 209 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Viun7g01389 209 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Viun7g01389 209 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Viun7g01389 209 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Viun7g01389 209 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Viun7g01389 209 PANTHER DNA-BINDING DOMAIN 45 201 IPR044808 GO:0003700|GO:0009873
Viun7g01389 209 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Viun7g01389 209 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Viun7g01389 209 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Viun7g01389 209 FunFam Ethylene-responsive transcription factor 2 71 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01389 Viun-Chr7 17337987 17338616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01389 41 208 AP2-EREBP Transcription Factor Family AT3G23240 53.846 7.89e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g01389 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01389 K14516 - gmx:100812017 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01389 7 17337987 17338616 Viun6g01685 6 24499173 24499908 ECH
Viun7g01389 7 17337987 17338616 Viun7g02558 7 29455439 29456528 ECH
Viun7g01389 7 17337987 17338616 Viun7g01389 7 17337987 17338616 ECH
Viun1g02099 1 32319361 32320021 Viun7g01389 7 17337987 17338616 PCT