Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01388 ATGGAAGAGGACTCCTCTAAGGATAAAAACTTGCACACCAAGAAAGAGCCACACTATAGAGGAGTCCGGCAGCGGCCGTGGGGAAAGTTCGCGGCTGAGATTCGGGACCCCACCCGCCATGGCGGCCGAGTGTGGCTGGGAACATTCCTCACGGCCGTCGAGGCTGCTAGGGCTTATGACCGTGCTGCCTTTGAGATGAGAGGTGCTTCAGCCGTTCTCAATTTTCCAAATGAGTATCCTTCATGCTCTTCTATGAGTTCCTCTTCATCATTAGCACCTTCTTCTTCTTCTTCCTCTTCATCTTCTTCCATGCTTAAAAATGATTATGGTAAACAAGTTATTGAGTTTGAGTGCTTGGATGACAAATTGTTGGAGGACCTTCTTGATTGTGATGACTATGCCTACCAGAAAGACTTGCCTAAGAAGTGA 429 0.4802 MEEDSSKDKNLHTKKEPHYRGVRQRPWGKFAAEIRDPTRHGGRVWLGTFLTAVEAARAYDRAAFEMRGASAVLNFPNEYPSCSSMSSSSSLAPSSSSSSSSSSMLKNDYGKQVIEFECLDDKLLEDLLDCDDYAYQKDLPKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01388 142 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Viun7g01388 142 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Viun7g01388 142 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Viun7g01388 142 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Viun7g01388 142 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Viun7g01388 142 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Viun7g01388 142 MobiDBLite consensus disorder prediction 80 105 - -
Viun7g01388 142 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Viun7g01388 142 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Viun7g01388 142 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Viun7g01388 142 PANTHER DNA-BINDING DOMAIN 12 129 IPR044808 GO:0003700|GO:0009873
Viun7g01388 142 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01388 Viun-Chr7 17329038 17329802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01388 15 132 AP2-EREBP Transcription Factor Family AT3G23230 60.331 5.74e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g01388 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01388 - - gmx:100810414 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01388 7 17329038 17329802 Viun7g01388 7 17329038 17329802 ECH
Viun7g01388 7 17329038 17329802 Viun1g02097 1 32308650 32309333 PCT