Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01387 ATGGCACTGAACAAGAATCACTCCTACAACAACAAGCTTGGATATGAAGCTCTCCCACCTATGAAAGCCCTGGCTGAAACACTTCAACACCAACCACAACCTTCTTCCTCAGACTATGCTTTTCCAATATTTGTCATTGTTGTGCTCAGTATCTTGGCCACTGTTTTGCTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAACTGGCGTCAAGTTAACCCAATGAGATGGATTTCCCTCCTGAGAATACGACACAATGAGGATCCCTTCATAGCATTCTCTCCTGCTATGTGGAACCGAGGGCTAGATGAGTCTATCATCAGAGAAATCCCAACTTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACGTGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCCTTTCATTTGGACTGCATTGACGTGTGGCTTCAGGCCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCGTTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTGGGGGGAGAGCCTGGAGCAATGCTTCCACAGGTACAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAACCACTCTACAAGGAAGGTGGAGCACTTGAAACCATGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAGTTTCTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAGACATACTTGGATGCTCAAGTCACAATACAACGAAACAGGCACCAGAATGAGGCTAGTGCCAGTGAGTACTATAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGGTCCAAAAATGCAGTTCTTCCTCTGGAGAATGATGTTTAG 1038 0.4383 MALNKNHSYNNKLGYEALPPMKALAETLQHQPQPSSSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISLLRIRHNEDPFIAFSPAMWNRGLDESIIREIPTFQFIKGEEGEDQSVYGCVVCLAEFKERDVLKVLPNCNHAFHLDCIDVWLQANSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAMLPQVQQERNDSRGSLAHRNHSTRKVEHLKPWKCHHVSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVTIQRNRHQNEASASEYYNSRCRRAFFPFCYGKGSKNAVLPLENDV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01387 345 PANTHER RING-H2 FINGER PROTEIN ATL16 24 342 IPR044600 GO:0016567|GO:0016740
Viun7g01387 345 CDD RING-H2_EL5-like 132 174 - -
Viun7g01387 345 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Viun7g01387 345 SMART ring_2 132 173 IPR001841 -
Viun7g01387 345 Pfam Ring finger domain 132 174 IPR001841 -
Viun7g01387 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
Viun7g01387 345 SUPERFAMILY RING/U-box 109 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01387 Viun-Chr7 17282471 17284160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01387 32 308 C3H Transcription Factor Family AT1G04360 44.337 5.73e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01387 K19041 - gmx:100809883 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01387 7 17282471 17284160 Viun7g01387 7 17282471 17284160 ECH
Viun7g01387 7 17282471 17284160 Viun1g02096 1 32304277 32305212 PCT