Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01372 ATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGCGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTTTCAAAGCTCCTTGCTCACCTCCCTGTGAGTGATCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCTATTTATGGCTGTGTCTCCCATATTTTTGCACTGCAGCAACAGGTGGTGAATTTACAAGCACAGCTGGCTTATCTGAAGGAACAAGCTGCCCAGAGTTTTCTCAATGCCTCTGTCAGTGAAAACCCTAATGAAAAATTATTTGAAAAATCTTCAGCTGCTTTACCCCAAGATCTTCAAAGTTGGTTTCAGGTGGAAAATTCCAACCTGGGGCCAGAGTTTCTTCCTAACATGTGTACTAATTTATCAACACAAAAACATTATGGGAACAATGTTCTCATCGAAGATCTAAACCCTACCGGCATCAATTATGAAAATTCAGGTGCCATGGAAGAAAACAGCTCCTTTTCTAGCTTTGACGAGAGTTCCAATAGCTACTCCATGTCCTATGACATGCACACAAACAGGAGGACGTGGGGTTTTCATGAAGTGGAGGATCTACATTCAGTGGCTTTTGGGTACAGTGCTCGATCACATTCATGA 717 0.4282 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSFLNASVSENPNEKLFEKSSAALPQDLQSWFQVENSNLGPEFLPNMCTNLSTQKHYGNNVLIEDLNPTGINYENSGAMEENSSFSSFDESSNSYSMSYDMHTNRRTWGFHEVEDLHSVAFGYSARSHS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01372 238 Coils Coil 87 107 - -
Viun7g01372 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 188 - -
Viun7g01372 238 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Viun7g01372 238 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01372 Viun-Chr7 16891872 16892938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01372 7 232 AS2 family AT3G58190 52.632 5.57e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun7g01372 LOB 5.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01372 K13945 - gmx:100805623 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01372 7 16891872 16892938 Viun7g01372 7 16891872 16892938 ECH
Viun1g02087 1 32230241 32231369 Viun7g01372 7 16891872 16892938 PCT