Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01328 ATGATGGGCCAGAAGTTTTGTGTGAACGAAGAAGACAAGGGTGTGTTAGAGTCTGTGTTGGGTGCAGAGGCTGTTGCGTTTTTCATTTCAGCACTTTCCAATAACGTCTTTTCCAGCGTTGTTGCTCCTTCTGTCGGTGCTGAGCCGTCCCACCGACAGAGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAACTATGCAGTGTTCTGGCAAGTTGCTGGTTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGATGGGCATTGCAGTGATGCCAAAGGGAAGAGGAGTGGAATTGGGAAGGAGGATGAGCAGGAGTTGAGAAAGATGGTGCTGCAGAAGCTTGATGCCTGCTTTGGTGGGTATGTGTCGAAAGAGGCTAATTATGCAAGACTGGATAGGTTGTCTGATTTGCTCATGTTTTACTTATCCTCAATGTGTTATATATTCGGTTTTGATTCGCCATGTGGCCCTGGGAGTTCATTCAAATCTGGTAAATTGATTTGGACATCTGATGCTGCTGGTTGTTTAAATCAATTGGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGCTTTTGTTCCTCTGAAATCTGGGGTGGTGGAGCTTGGTTCGAATGAAGTGGTGTCTGAAGAGCAGGGTTTTGTGGAGATGGTCAAGACAGCATTTGGGGAATCCAGTCCGGGACAAACTAAGGTGTTTCCGAAGATTTTTGGGCACGAGCTAAGCCTGGGGGATACAAAATCGCAGTCTATAACCATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCTTTTGAAGTTCAAGCACTGGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGAACTTTAGGGGACAGTAGTGAAGGGAAGATGTTCCCTCAATTGAATCAAATGATGGGGGGGAATTTTAATGCTCAAGCAAGGGTTCCTTGTCTGGATCTCGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGCGTAAGCGAAAAAGAGGTAGAAAACCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAAAGACGTGAGAAGCTTAACCAGAGGTTCTACGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATTACTGATCTCCAGATGAAGATCAAAGTATTGGAAGCTGAGAAGAACATGATTAACAACAAGGACCAGAGGTTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCTTTAGATACTCACCCTGTTTCTGATGTTGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACACTAATGTTTCTACTACAGATGATAAAATCATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCCATACAGTTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAAATTGTCCATGA 1518 0.4453 MMGQKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSSVVAPSVGAEPSHRQRLCQLVEGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDAKGKRSGIGKEDEQELRKMVLQKLDACFGGYVSKEANYARLDRLSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKLIWTSDAAGCLNQLESRSFLGKVAGLQTVAFVPLKSGVVELGSNEVVSEEQGFVEMVKTAFGESSPGQTKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGVNHAYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPXKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQRLSLPDMDFQEREDDTVVTVRCPLDTHPVSDVVKTFREHQIVAQDTNVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEAALSKNCP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01328 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Viun7g01328 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 227 IPR025610 -
Viun7g01328 506 PANTHER MYC 49 500 IPR045084 GO:0003700|GO:0006355
Viun7g01328 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Viun7g01328 506 MobiDBLite consensus disorder prediction 330 363 - -
Viun7g01328 506 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Viun7g01328 506 Gene3D - 346 418 IPR036638 GO:0046983
Viun7g01328 506 CDD ACT_UUR-ACR-like 436 503 - -
Viun7g01328 506 Coils Coil 398 418 - -
Viun7g01328 506 CDD bHLH_AtAIB_like 349 426 - -
Viun7g01328 506 MobiDBLite consensus disorder prediction 326 363 - -
Viun7g01328 506 FunFam Transcription factor bHLH13 345 419 - -
Viun7g01328 506 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01328 Viun-Chr7 16003853 16006132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01328 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.441 8.74e-152 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01328 bHLH-MYC_N 1.7e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01328 - - gmx:100782107 914.064