Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01320 ATGGAAGGAAACTATCTGAACAGAAATAGTACTACTACTCCACAGAGAGAAGATAGCTTTGGCTTTGAGGAGCATACATGGGGAAATTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCTAGATTGAGATCATCCTTGTCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAGCACTAAGCCTAATAAATCAACTCTTCTTCCAACATCTTCTTCACCATCTCCTTTCTCTGATCAGCCTTTGAACTCTTCACATCCTTCTCCACTTTGCACTCCTTGTCTCACTTTGTCTTCTTCACCAGACTTCTCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACACCTTCTCCTCTTTTCAGTCCTCAAAGCTTCGAAATTAAGATGATGACAAGTAACAACACAAGGAGTGATGAGGAAATGAAGGGCTGTGTAGAGGGGGAGGAGCACAAGGGTTTCAAGGACAATGACCAAAACATTACTTTGGAATTAGGAATAGGGTTGATTAAACACCAAGAGAAGAAGTTAGACTTGGAGCTTCGACTCGGGCATTTCTAG 630 0.4302 MEGNYLNRNSTTTPQREDSFGFEEHTWGNSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNKSTLLPTSSSPSPFSDQPLNSSHPSPLCTPCLTLSSSPDFSASTSGDKKPRLTPSPLFSPQSFEIKMMTSNNTRSDEEMKGCVEGEEHKGFKDNDQNITLELGIGLIKHQEKKLDLELRLGHF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01320 209 SMART c2h2final6 36 58 IPR013087 -
Viun7g01320 209 MobiDBLite consensus disorder prediction 70 110 - -
Viun7g01320 209 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Viun7g01320 209 MobiDBLite consensus disorder prediction 1 17 - -
Viun7g01320 209 PANTHER OS07G0101800 PROTEIN 15 208 - -
Viun7g01320 209 Gene3D Classic Zinc Finger 24 85 - -
Viun7g01320 209 Pfam C2H2-type zinc finger 36 60 - -
Viun7g01320 209 MobiDBLite consensus disorder prediction 125 145 - -
Viun7g01320 209 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Viun7g01320 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Viun7g01320 209 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01320 Viun-Chr7 15810564 15811821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01320 24 207 C2H2 Transcription Factor Family AT3G23130 41.451 2.95e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g01320 zf-C2H2_6 5.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01320 - - gmx:102660985 305.064