Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01315 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTGTAGTTTGGGCGTAAAATCTGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGTTACTAAGAATGATTCAGTGACCGTTACTGAAGCTGAAGGTAGTGCTGAGGAAGAATGTTCTGATTTACGTGAAAATGTCGATCCATCGGCTAATCCTAAAGCTGAACTTCATCAGAAGTTGAGAACTGTTCAATTTGAAATTGATGCCGTTGCCTCCACCGTTGGGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTAATGCTGGTGAAGAAGACTTGGTGTCGGGGATTGCTGAGGTTGATTCCTCCAACAATTCAAACCTTCAGTGTGCTCTTAGTGCCGATAGGTTGAGGAGTCTGAGGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCCAAGGATGATGCTTCGAAAAGTGTTGAGGATGGACAATTGATCTTTAGTTTAGCTAGGGAAGAACGGAAGCCCAAGAGGAAGGTTAAAGAAGATAAAAAATCAGACAAAGGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGACGATGATGTTGATTTTGATACTGTTCTGGATGCAGCCTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGGAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTGAACAACTAGAAACGTCAACTAGTCATAATGCAGCTGAGGAGGAAAATGCTAGTGATCTTGCTGCTGCCAGTGTTGAAAGAGCTGCCAAATCTATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCACCGAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAGGAAACCACTACAATCTTCCAAACCTCTAGATAGAGAAATGGAGCTAAATAAAGATTCAAAAAGGAAGAAGAGGCGGCCTCTGCCTGGAAGAAAGTGGACCAAGCGTGTTTCTTGCGAGGATACACGTATGGAAGAAAGTGAAAATGGAGATGGTTGCTTAGATAGTTCCAGTTTTGAAAATTTAGAAGAGCAAGGCATTGAACTTGATGATCATGAATCTTATGTAACGTTAGAAGGTGGGCTGAAAATCCCTGTTAAGATATTTGAAGCTCTGTTTGAGTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGGCTTGGTAAAACTGTCCAGGTCTTATCGTTTCTTGGTGCACTGCACTATAGTGGCATGTATAAACCTAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCTTGTAGAGCTTTTACATGAATCGGCTGAAGATTCTGCTCCTAGGAAGAAGCGAGCTAAATCTGAAGAAACAGACTGTGAAACCAATAGTTCAAGTGACAATGATTATGAAAAAGGTGTGCCACCATCTAGAAACACAAGAAATTGGGAATCCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAACAGCTCAGAATATTGGGGGATCAGTTGCTTGATATTCAATGGGGTTATGCAGTTCTTGACGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTTGTTTGCAAGCAGCTACAAACTGTACATCGAATCATAATGACTGGTGCACCTATTCAGAATAAACTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTACCTGTATTCGAAGTTGAATTTGCAGTTCCTATAGCAGTTGGTGGGTATGCAAATGCTTCACCTTTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTCCGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCGAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTACTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACGTCTTCTGGTCATGTTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCCTTAATAGATGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACGACCAGAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCCAGAGAGCGGGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGGAGAAACTGGGTCAACTGAAACTTCAAACATTTTTAGTCAAATATCTGAACAAGTGAATGTCATTGGGACACAGAAAGAAAATAAGGACAAGAATGAACATAGCCAAACTGCCAGACTGGATTCTGAAGATGTTGTAGTTAATAATGATGACAAGTCAGAGAGAGGATCTCCGGAGGGAAAGGGGAAAGAGAAGGTTGAACATAATAATGGGGTTGATGATGGAACAGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCTCAAGTTGCAGGAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCCACTTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGTCGGAAGTTTGGTTCAACTGTGAATCCCCTGTTGGTAAATAAAAGCAAGGGAACTACGAAGTTAAATGGATTCGCTGCTGGGGCATCGGCTGGTAAAGCATTATCTTCTGTCGAACTATTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTGGAACATCAGTCTAGTATGTTATCAAGTTCCACGAATCAAGCAAGATCTTTAGATGTTAGATCTTCCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTCAGTATTTCAAGGAACGTATTCCCTCACAAGATCTTGCCCTGTTCAAGAATCTGTTGAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAACCAGACTATCAATTCTGA 3654 0.4204 MEEEEDRILLCSLGVKSANPEDIERDVLEKVTKNDSVTVTEAEGSAEEECSDLRENVDPSANPKAELHQKLRTVQFEIDAVASTVGRLRNVENNEECSNAGEEDLVSGIAEVDSSNNSNLQCALSADRLRSLRKTKAQLEKELLNLSKDDASKSVEDGQLIFSLAREERKPKRKVKEDKKSDKGKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFEQLETSTSHNAAEEENASDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLRKPLQSSKPLDREMELNKDSKRKKRRPLPGRKWTKRVSCEDTRMEESENGDGCLDSSSFENLEEQGIELDDHESYVTLEGGLKIPVKIFEALFEYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHYSGMYKPSIIVCPVTLLRQWKREANKWYPKFLVELLHESAEDSAPRKKRAKSEETDCETNSSSDNDYEKGVPPSRNTRNWESLINRVMRSESGLLITTYEQLRILGDQLLDIQWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEVEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTSSGHVYRRMDGLTPVKQRMALIDEFNASSEIFIFILTTRVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEQVNVIGTQKENKDKNEHSQTARLDSEDVVVNNDDKSERGSPEGKGKEKVEHNNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVAGRAAEALRQSRMLRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTVNPLLVNKSKGTTKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSMLSSSTNQARSLDVRSSRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKERIPSQDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01315 1217 Coils Coil 1014 1034 - -
Viun7g01315 1217 Pfam Helicase conserved C-terminal domain 749 851 IPR001650 -
Viun7g01315 1217 SMART helicmild6 768 851 IPR001650 -
Viun7g01315 1217 Pfam SNF2-related domain 396 719 IPR000330 GO:0005524|GO:0140658
Viun7g01315 1217 Gene3D - 365 654 IPR038718 -
Viun7g01315 1217 CDD SF2_C_SNF 737 862 - -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 1038 1063 - -
Viun7g01315 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 655 IPR027417 -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 479 511 - -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 1034 1063 - -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 1120 1143 - -
Viun7g01315 1217 SMART ultradead3 389 616 IPR014001 -
Viun7g01315 1217 CDD CSB_WHD 1150 1216 - -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 305 323 - -
Viun7g01315 1217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 605 IPR014001 -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 269 356 - -
Viun7g01315 1217 FunFam Protein CHROMATIN REMODELING 8 371 654 - -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 934 982 - -
Viun7g01315 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 912 IPR027417 -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 334 351 - -
Viun7g01315 1217 MobiDBLite consensus disorder prediction 479 494 - -
Viun7g01315 1217 Gene3D - 661 963 IPR027417 -
Viun7g01315 1217 Coils Coil 122 149 - -
Viun7g01315 1217 PANTHER SNF2/RAD54 FAMILY MEMBER 166 1199 - -
Viun7g01315 1217 CDD DEXHc_ERCC6 393 604 - -
Viun7g01315 1217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 742 901 IPR001650 -
Viun7g01315 1217 FunFam DNA excision repair protein ERCC-6 662 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01315 Viun-Chr7 15369360 15376297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01315 386 904 RAD5 or RAD16-like Gene Family AT1G02670 22.673 3.21e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g01315 SNF2_N 4.3e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01315 K10841 - gmx:100820025 2023.82