LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g01309	ATGTCTGTTGTCCAAAAACACACCCACTCCTTACAAGAACTCAACCCGAAGAAGGAAAGCTGGAATATCGTTGCAAGAGTGGTAAGGTTATGGTTTATTGAAGATTACACAAAAGGAAAATCTCCATTTTCCATGGAAATTGTTCTTCAAGACAAAGAGGGTGTCCTAATCCATGCATATGTTAGACGCACATTGATATACAAATTTCAGACTAAAATCAAAGAGGATAAGGTTTACACCATTCAATCTTTTAGTGTTTCATGTAATGGTGGTTCTTATAGAACTACAAATCATGCCTATAAGATCAACTTCCAATTTGCAACTAAGGTCAATATGGTTGAAAGTACCTTAGTTCCGAAAACTAGAACTGCATACACCCCTTTTTCAACCATCAAAGCTGCTGGTTTTGACACAGATTACTTAGTTAATGTCATTGGAATGTTTACTGGTGTTGGAACAGAGAGAGAGCTAGAGAAAGGTGGTAAGAAGACCAAAATGAATGTCATCCTTATTGAAGCTTATGGTTTGCGATTGGAGTGTACTTTATTTGGTCAATATGTTGATTTGTTAAAAGCATTTTTGGCCTCTGGAGAGGATCAACATGTTGTCATTGCTTTACATTATTGCAAAGTGAAGACCTTACAAGATAAAGTTTCTATTCAAAACTATATGAACTATACGAAGATAATTTTTAACTGTGATGTTGAAGATGCAACGAAGTTGAAAAAAATGTATAAACTTAAACTTAGTGTAATTGATGCTACGGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTATGATATTCTTGACTTACAAGACAAGGATCTCTACTCTGCAAATGAAGAAGAAAGCAAAGTAAATGACCTAACAAATCAAATCTCATCTGATTCCATTGCAGAGGATTTGCTTATCAAATTCACAGAAGAATCAAATGATGTTGAGACTCTAAGTGATCATTTGAACACTATAGTATCAAGCCATGTTTCTGCAAAGGAATCGTTGAATAATAAAGTTGTAATTGATGTTGAAATTGATGAGTTAACCCGCAAAGAATCATCTCATCTGGACAATCTTCACTTGGCTACTCAACCACCTGTCCCAGCACTTAAAAGACATATTCGATCTATGGTTCAAGAAAATAAGAAGATTCCAGTGAAAATGTTGAATATCAAGATTGAAAAGTGA	1215	0.3465	MSVVQKHTHSLQELNPKKESWNIVARVVRLWFIEDYTKGKSPFSMEIVLQDKEGVLIHAYVRRTLIYKFQTKIKEDKVYTIQSFSVSCNGGSYRTTNHAYKINFQFATKVNMVESTLVPKTRTAYTPFSTIKAAGFDTDYLVNVIGMFTGVGTERELEKGGKKTKMNVILIEAYGLRLECTLFGQYVDLLKAFLASGEDQHVVIALHYCKVKTLQDKVSIQNYMNYTKIIFNCDVEDATKLKKMYKLKLSVIDATDSTTFVVFDRDASAMLKKSCYDILDLQDKDLYSANEEESKVNDLTNQISSDSIAEDLLIKFTEESNDVETLSDHLNTIVSSHVSAKESLNNKVVIDVEIDELTRKESSHLDNLHLATQPPVPALKRHIRSMVQENKKIPVKMLNIKIEK	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g01309	404	CDD	RPA1_DBD_A_like	23	110	-	-
	Viun7g01309	404	Gene3D	-	6	112	IPR012340	-
	Viun7g01309	404	Pfam	Domain of unknown function DUF223	46	141	IPR003871	-
	Viun7g01309	404	SUPERFAMILY	Nucleic acid-binding proteins	125	249	IPR012340	-
	Viun7g01309	404	SUPERFAMILY	Nucleic acid-binding proteins	8	114	IPR012340	-
	Viun7g01309	404	CDD	RPA1_DBD_B_like	143	237	-	-
	Viun7g01309	404	Gene3D	-	118	255	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g01309	Viun-Chr7	15211171	15213814	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g01309	6	245	Core DNA Replication Machinery Family	AT5G08020	24.194	1.29e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g01309	-		-	vun:114165449	502.671