Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01306 ATGGAGCATGTGATTGGTGGCAAGTTTAAATTGGGAAGGAAAATTGGGAGCGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAGCCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAATTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTTTGGAAGATTTGTTCAATTATTGTAACCGGAAGTTCTCGTTGAAGACAGTTTTAATGCTTGCTGATCAGTTGATTAACAGAGTTGAATATATGCATTCCAGAGGTTTCCTTCACCGTGACATCAAGCCCGACAATTTCTTAATGGGTCTAGGACGGAAAGCAAATCAAGTGTATGCCATTGATTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGTACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTACGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCAACTCCCATAGAGGTGCTTTGCAAATCTTATCCCTCTGAATTTGTATCATACTTCCACTATTGCCGTTCATTGCGATTTGAGGACAAACCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTGTTTATTAGAGAAGGCTATCAGTTTGACTACATTTTCGACTGGACTATGTTAAAGTATCCACAGATCAGTAGTAGCTCAAGAGGACGGCAGCATGGCACTGGCAAGGCAGCTGTGCAAGCAAGTCCACATGTACAAAAGCCAGAAAAAATATCAGTTGGGAAAGACATTCGAGAGAAATTCTCTGGTGCAGTTGAAGCATTCTCCAGGAGGAATCCTGCAGGTTCAAGTCCTCATGTTGATCACGTCAAACAGAGGAGTTTTGAGGATGTACCGGTGCAAAAGGATACGCACTATGGCCAGCACAATACTGGTCGATATGGCAGCAGTTCTAGAAAAGCCATGATCACATCAAACAAGCCAGTTTCCTCAGGTGACCATACTGGCAGGCCAACCATGACTGGGAGCCGTCCATCTGGTGCTCATAGAATTCAACCGGCATACGACACCAAACAAGCAAATTATGCACGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGCCAGAGGCCACCGCGATGATCCTCTGAGAAGCTTTGAGCTCCTCAACATCAGGAAGTAA 1395 0.4502 MEHVIGGKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGIEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISSSSRGRQHGTGKAAVQASPHVQKPEKISVGKDIREKFSGAVEAFSRRNPAGSSPHVDHVKQRSFEDVPVQKDTHYGQHNTGRYGSSSRKAMITSNKPVSSGDHTGRPTMTGSRPSGAHRIQPAYDTKQANYARGGGGGGGGGGGGGARGHRDDPLRSFELLNIRK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01306 464 CDD STKc_CK1_delta_epsilon 8 282 - -
Viun7g01306 464 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Viun7g01306 464 MobiDBLite consensus disorder prediction 372 414 - -
Viun7g01306 464 PANTHER CASEIN KINASE-RELATED 8 340 - -
Viun7g01306 464 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Viun7g01306 464 MobiDBLite consensus disorder prediction 448 464 - -
Viun7g01306 464 MobiDBLite consensus disorder prediction 368 464 - -
Viun7g01306 464 Gene3D Transferase(Phosphotransferase) domain 1 1 341 - -
Viun7g01306 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Viun7g01306 464 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g01306 464 FunFam Putative Casein kinase I 1 85 - -
Viun7g01306 464 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g01306 464 FunFam Casein kinase 1-like protein 1 331 - -
Viun7g01306 464 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g01306 464 MobiDBLite consensus disorder prediction 301 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01306 Viun-Chr7 15040314 15048523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01306 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 4.38e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Viun7g01306 Pkinase 4.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01306 K08960 K08959 gmx:100789031 852.047