Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01289 ATGAAGTGTCTACGGTCAGGAGAGTCGTTGGGAGGAGCTGATGAAGTGTTTCCTTCATCTGGATCTCTTGCAAGTGCAACCAAGGACTTTTCAGCTAGTGAAAACTCTTGCTTAGGTGAACACATTGATAAGAAGCCGGACACTGGGAACATAGAAGAAGCTGAATCATCCTTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGACATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCCGCAAGAAACATTCTCAAAATCATGCTGAACCGCAAATGTCTATACATTCTGTTGGCTTACTATTGGAATCTGTCTTCCTCAAAGCAAAATCTTTGCAGATTCTTGAAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTTTGGATATAGTGGAATCTTCATTACCCGAAGGCTTGCCTGATAATTTCGGTGCTGAATGTAAATTACAGGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCAATTTTGTCTTACCGACGAGCACTACTTCATCAATGGAATCTTGATGCAGAGACCATAGCAAAAATTCAGAAAGAATTTGTTATTTTCCTTCTTTACAGTGGAGGAGAAGCCACACCACCCAATCTCCGGTCCCAAATGGATGGCTCATTTGTACCTAGAAATAACATAGAAGAGGCTATACTTATCTTAATGATTTTGTTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTCTCATTTGCTCTGTCAGTTTCTGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGTTTCCACGGACAATTCCTAGAAGTGAAAGGTACTACACTCTAGCTCTTTGTTATTATGGAGCTGGTAGAGATCTGGTAGCACTGGATTTTCTCAGAAAGTTGTTGAGGAGTAGAGAGGACCAAGACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTCTGAGAACTGTTCTCTTGCAGAAGAAGGAGTAAGCTTTGCCAAGCGAGTGCTTCAGAACTTGGATGGCAGATGTAATCAGCTAGAAGATCATGGTAATTTCTTTCTTGGTGTCTCACTTTCAGCCCAGTCGAAATTGGCAGTTTCTGATTCTGAAAGGGTTAAGGGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGCCAGAACAAGAAACCCCCTTGTACTATACCATCTCAGTCTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTGCATAAAACTGGAAGGTGGTTCTAATATTAAAGGATGGTTGTTGTTAGCCCGGATACTGTCTGCTCAAAAACAGTTTCTGGATGCCGAATCTATCATCGATTCTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGTGCAAGTTAAGGAATGCCATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCTGGAAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTACTTATGTATATATCAGTCTTTTACAGTGGCATGATGCAGAGGTGTGCCTTTCAAAATCCAAGGCAATCAAACCACTCTCTGCATCTAGATGTCATGCAATAGGCGTAATGTACGAAGCTAAGGGCCATTACAAAGAGGCTCTAAAATCTTATGGTGATGCTTTGGACATTGATCCTGGCCATGTCCTTAGCTTAGTCTCCAGTGCTGTAGTTCTTAAACGATGTAGTAGTCACTCAAATCCAACAGTTAAAAGCTTTCTGATGGAAGCACTACGACACGACAGATTCAATGCTTCTGCTTGGTATAATCTTGCTCTTCTTCACAAAGCTGAGGGCACATCATCATCATTAGTTGAAGCTGCAGAATGTTTTCAAGCTGCACATTTTCTTGAAGAATCTGAACCTGTTGAACCTTTCAGATGA 2136 0.4082 MKCLRSGESLGGADEVFPSSGSLASATKDFSASENSCLGEHIDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKKHSQNHAEPQMSIHSVGLLLESVFLKAKSLQILERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLNKAVELLPELWKLADCPREAILSYRRALLHQWNLDAETIAKIQKEFVIFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILILMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELFPRTIPRSERYYTLALCYYGAGRDLVALDFLRKLLRSREDQDHVPGLLMASKICSENCSLAEEGVSFAKRVLQNLDGRCNQLEDHGNFFLGVSLSAQSKLAVSDSERVKGQSEALHALETAARTRNPLVLYHLSLEYAEQRKLDAALHYAKCCIKLEGGSNIKGWLLLARILSAQKQFLDAESIIDSALDQTGKWDQGDLLRTKAKLQIAQCKLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDITYVYISLLQWHDAEVCLSKSKAIKPLSASRCHAIGVMYEAKGHYKEALKSYGDALDIDPGHVLSLVSSAVVLKRCSSHSNPTVKSFLMEALRHDRFNASAWYNLALLHKAEGTSSSLVEAAECFQAAHFLEESEPVEPFR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01289 711 PANTHER PROTEIN NPG1 1 711 IPR043376 -
Viun7g01289 711 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Viun7g01289 711 Gene3D Tetratricopeptide repeat domain 422 508 IPR011990 GO:0005515
Viun7g01289 711 SMART tpr_5 438 471 IPR019734 GO:0005515
Viun7g01289 711 SMART tpr_5 509 542 IPR019734 GO:0005515
Viun7g01289 711 SMART tpr_5 473 506 IPR019734 GO:0005515
Viun7g01289 711 SMART tpr_5 319 352 IPR019734 GO:0005515
Viun7g01289 711 SMART tpr_5 565 598 IPR019734 GO:0005515
Viun7g01289 711 SMART tpr_5 134 167 IPR019734 GO:0005515
Viun7g01289 711 SMART tpr_5 599 632 IPR019734 GO:0005515
Viun7g01289 711 SMART tpr_5 669 705 IPR019734 GO:0005515
Viun7g01289 711 Pfam Tetratricopeptide repeat 602 632 IPR013105 -
Viun7g01289 711 Gene3D Tetratricopeptide repeat domain 509 707 IPR011990 GO:0005515
Viun7g01289 711 Gene3D Tetratricopeptide repeat domain 42 384 IPR011990 GO:0005515
Viun7g01289 711 SUPERFAMILY TPR-like 311 502 IPR011990 GO:0005515
Viun7g01289 711 SUPERFAMILY TPR-like 510 683 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01289 Viun-Chr7 14909508 14914872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01289 1 711 Calmodulin-binding Proteins AT4G28600 58.091 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01289 K21843 - gmx:100800762 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01289 7 14909508 14914872 Viun1g02138 1 32681385 32686970 PCT