LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g01284	ATGGCCATCACTGCTGCCTCACCTACTGGTTCTCACTCCCGAAATGGATTCCGTTTCTCGGACCAGGAAAATGGAGACTACAATCAACACAACTATGGTCAAGCATTCTCAGTGGCCGGAAGTGAGGATTTTGAAGGACAGAAAGCATTCTACAGAAATGAAGAGAAACGGAAAGATAAGAGAAGTTTAATGAGCAACAACCAAGAAGACGACAATCTGTTGGGTGAGGCAAGGCAACCATTGTGGCGCAAGATTCCAATAGCTTCAAGCAAAATCAACCCATATCGCATAGTGATAATCTTGCGTGTGGTTATCCTAGTTTTCTTCTTCCACTTGCGCATCACAACTCCAGTGCATGATGCACTTGCCTTATGGATAATCTCTGTGGTGTGTGAAATCTGGCTTGCACTATCTTGGATGGTTGACCAACTCCCCAAGTGGTTCCCTATTACTCGTGAAACTTACCTTGAACGTTTGTCCTTAAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCGGTTGATATCTTTGTAACCACTGCAGACCCTTTTAAGGAACCACCTATTCTAACCGCAAACACGGTTTTATCAGTCTTGTCTGTTGATTACCCTGTTGAGAAGGTTAGCTGCTATGTCTCAGATGACAGTGCTTCAATGCTTCTCTTTGATACCTTGTCAGAAACTGCCGAGTTTGCTAGAATATGGGTTCCTTTTTGTAACAAGTATAACATTGAGACAAGGGCACCTGAGTTTTATTTCTCTGAGAAACTTGATTACTTGAAAGATAAGGTGCACCCCACATTTGTTAAGGATCGCAGGGCTATGAAGAGAGAATACGAAGAATTCAAGGTGAAAATTAACGTACTGGTTGCAAAGGCTCAGAAGAAACCAGAAGAAGGGTGGGTTATGAAAGATGGTAACCCATGGCCTGGGAGCAACATGGATGATCATCCAGGAATGATTCAGGTATGTCTAGGAAGTACTGGCTCACTGGACAAGGAAGGCAAGGAACTACCTCGGCTTGTGTATGTTTCCAGGGAAAAACGTCCTGGATATCAACACCACTGGAAAGCTGGTGCCATGAATGCTCTGGTTCGAGTTTCTGCTGTGCTTAGCAATGCACCTTTTGCATTAAATCTGGATTGTGACCAATACATCAATAATAGCAAGGTTCTTAGGGAGTCTATGTGCTTTTTAATGGACCCCCAACTTGGAAAGAAGTTCTGTTATGTACAATTTCCAAAAAGGTTTAATGGCATCGATTGCAATGACAGATATGCTAATCACAATACTGTGTTCTTTGATATCAACATGAAATGCCTTGATGGGATTCAAGGTCCTCTGTACGTTGGTACTGGATGTGTGTTCAACAGGCAAGCATTATATGGCTTTGATCCACTTTCTGATAAAAGGCCAAAGATGAAGAGTTGCTGCTGGCTTTCATCCTGCAGCTGCAGTTATAGTGACTCCGAGTCTTCATCTGATGACGAGACTGATCAAGAGCTTGTAGACTTTGATGACGAAGAGGAAGAGGAATTATCCTTCATGTCCATGAAAAGTTTAGAGAAACGATTTGGACAATCACCGGTTTTCATTGCTTCTGCTTTGATGGAAGATGGTGGACTTCCCAAAGGCACAAACACCCGAGTACTGATTAAGGAAGCAATTCATGTTATAAGCTGTGACTATGAAGAGAAAACTGAATGGGGAAAAGAGATTGGGTGGCTATATGGTTCAGTGACAGAAGACATCTTAACTGGGTTTATCATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCAAAGAAAGCAGCTTTTAAGGGATCTGCTCCTATAAATCTATCAGATCGATTACACCAAGTTCTGAAATGGGCTTCTGGTTCTACTCAGATTTTCTTTAGTAGTTATTGCCCTTTGTGGTATGGCTATAGTGGAAAACTCAAATGGCTACAGAGGTTGGCCTACACTAATTCCATCGTCTATCCATTTACTTCTATCCCCCTGCTGATCTACTGTACAATTCCTGCAGTCTGTCTTCTGACTGGAAAGTTCATCATCCCCACTCTGTCAAACCTTGCTAGCATTTGGTTAATGGCCTTATTTATCTCCATCATCTTAACATGTATGCTAGAGCTTCGTTGGAGTGGGGTTAGCATTCATGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGGGGTGTATCTTCACACCTTTTTGCTGTATTTCAAGGTCTTCTTAAAGTTGGAGGAGTAAACTCTAGCTTCACAGTGAGAGCAAAATCAGCACATGACACTTCATTTGGACAGTTCCATCTCTTCAAGTGGACTAGTCTTCTAATCCCACCAACAAGTCTTGTGATCTTAAATATGGTGGGAATTGTGGCTGGAATCTCTGATGCCATTAACAATGGCTATGATTCATGGGGACCTTTCTTTGGGAAGCTTTTCTTCTCCTTGTGGGTCATTGTGCACTTGTATCCTTTCCTCAAAGGACTAATGGGAAAGCAAAACAGAACCCCTACCATTGTAGTCCTCTGGTCAATACTTGTAGCCATAATTTTCTCAATGATTTGGGTGCGAATTGATATTTTCTTGCCCAAGCACACAGGTCCAGCACTCAGACAGTGTGGGATAAGATGCTAA	2649	0.4273	MAITAASPTGSHSRNGFRFSDQENGDYNQHNYGQAFSVAGSEDFEGQKAFYRNEEKRKDKRSLMSNNQEDDNLLGEARQPLWRKIPIASSKINPYRIVIILRVVILVFFFHLRITTPVHDALALWIISVVCEIWLALSWMVDQLPKWFPITRETYLERLSLRFEREGEPNLLAPVDIFVTTADPFKEPPILTANTVLSVLSVDYPVEKVSCYVSDDSASMLLFDTLSETAEFARIWVPFCNKYNIETRAPEFYFSEKLDYLKDKVHPTFVKDRRAMKREYEEFKVKINVLVAKAQKKPEEGWVMKDGNPWPGSNMDDHPGMIQVCLGSTGSLDKEGKELPRLVYVSREKRPGYQHHWKAGAMNALVRVSAVLSNAPFALNLDCDQYINNSKVLRESMCFLMDPQLGKKFCYVQFPKRFNGIDCNDRYANHNTVFFDINMKCLDGIQGPLYVGTGCVFNRQALYGFDPLSDKRPKMKSCCWLSSCSCSYSDSESSSDDETDQELVDFDDEEEEELSFMSMKSLEKRFGQSPVFIASALMEDGGLPKGTNTRVLIKEAIHVISCDYEEKTEWGKEIGWLYGSVTEDILTGFIMHCRGWKSVYCMPKKAAFKGSAPINLSDRLHQVLKWASGSTQIFFSSYCPLWYGYSGKLKWLQRLAYTNSIVYPFTSIPLLIYCTIPAVCLLTGKFIIPTLSNLASIWLMALFISIILTCMLELRWSGVSIHDWWRNEQFWVIGGVSSHLFAVFQGLLKVGGVNSSFTVRAKSAHDTSFGQFHLFKWTSLLIPPTSLVILNMVGIVAGISDAINNGYDSWGPFFGKLFFSLWVIVHLYPFLKGLMGKQNRTPTIVVLWSILVAIIFSMIWVRIDIFLPKHTGPALRQCGIRC	882

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g01284	882	MobiDBLite	consensus disorder prediction	1	23	-	-
	Viun7g01284	882	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	78	849	-	-
	Viun7g01284	882	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	186	698	IPR029044	-
	Viun7g01284	882	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	281	469	IPR029044	-
	Viun7g01284	882	FunFam	Cellulose synthase	292	466	-	-
	Viun7g01284	882	Pfam	Cellulose synthase	175	875	IPR005150	GO:0016020\|GO:0016760\|GO:0030244

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g01284	Viun-Chr7	14876919	14881136	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g01284	56	882	Cell Wall Biosynthesis	AT5G17420	67.819	0.0	1216