LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g01277	ATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAACATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAATCCTTCCAATACCCACAGAAGATATGTATCCTAGGCTGCCTGAATCACAGTTGGATATTGTAGAACAAGAGCTTGTGACAAGACCTTATACTAATTCAAGTTATTTGAATTCAAATGGAGTAGTTGGGCATATTTTTTCGTCTTCTTCTGGATATTCAACTGACCTTCATCACTCATCTCTTTCACCTGATGAAAAGCACTCTACTAACGCTCGTTTTATTTCACAATCATCAACCAACATTGCCCAATTTCCATTATCATATTCTTCGAATACTGGACCACCAACTTCAGCAGCACCAAGCCATTTTTCCAAAGAAAACAGTGCTTCCTGGCATACAGAGTCCCTGCCCAGTTTTCTGGATTTTCCTGCACATCACTCAATGGACGATAACAGAGTAGAAAGTAGTGATTGCCCTATAATGGCATCCGAGGAGTATTGCAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTTACTGACAACATTCGAGACATTGAGCCAAAGGTGCCATTCCAGGTTGCAAAATCACTTTCACAGTTTCCAGGACATCAATCCCAAGGTCTACAACTTCCTGCTTCATATGGAGACAATTGCTCTGGAGCTACCCTCTCCTCCTCATCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGGTATAGACCGGAGTCATCTGAAGGAGTAACGGAGAAAAAAGCAGGTTCCATTGAAGATATGGCATCTCTAGATTTAAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTAGAGATTCAAAGAAATTTGCAGCTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAATCTGGAAGTGAAGCGTTGAAGGCATCATCATCTACCATTGAGACTCAATCTGGAGTATCTTTGAATGCCACGAGAGACTTCGCGGTCAAAAATGTTTTAGAAGCATCACAAGTAGAGCATTGTAGGTCAGAAGCTGATCATGCTAACCGCAGTACCACAGTTGAGGAAGGCTCGCTGGAAAAGGGTGGGAATGCTGATTCTCCCAAAACTCAACATGTTATTGCTAGTGATGACAGTGCAGAAGCCCCAAAACGTCAAAGAACAGAGTAA	1437	0.4273	MEAHPTFSIERSKQLNNMGMSGALSSSLSILPIPTEDMYPRLPESQLDIVEQELVTRPYTNSSYLNSNGVVGHIFSSSSGYSTDLHHSSLSPDEKHSTNARFISQSSTNIAQFPLSYSSNTGPPTSAAPSHFSKENSASWHTESLPSFLDFPAHHSMDDNRVESSDCPIMASEEYCKQNDWQEWAERLISDDDTLTSNWDDLLTDNIRDIEPKVPFQVAKSLSQFPGHQSQGLQLPASYGDNCSGATLSSSSNSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVTEKKAGSIEDMASLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGSEALKASSSTIETQSGVSLNATRDFAVKNVLEASQVEHCRSEADHANRSTTVEEGSLEKGGNADSPKTQHVIASDDSAEAPKRQRTE	478

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun7g01277	478	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	258	312	IPR006447	GO:0003677
Viun7g01277	478	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	255	315	IPR017930	-
Viun7g01277	478	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	234	468	IPR044848	GO:0003700
Viun7g01277	478	MobiDBLite	consensus disorder prediction	429	443	-	-
Viun7g01277	478	FunFam	Myb family transcription factor	257	315	-	-
Viun7g01277	478	Pfam	MYB-CC type transfactor, LHEQLE motif	343	390	IPR025756	-
Viun7g01277	478	Pfam	Myb-like DNA-binding domain	260	311	IPR001005	-
Viun7g01277	478	MobiDBLite	consensus disorder prediction	114	135	-	-
Viun7g01277	478	Gene3D	-	257	316	-	-
Viun7g01277	478	SUPERFAMILY	Homeodomain-like	255	312	IPR009057	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g01277	Viun-Chr7	14802825	14815592	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g01277	32	387	G2-like Transcription Factor Family	AT4G28610	50.000	1.36e-97	298

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Viun7g01277		Myb_DNA-binding	8.9e-09	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g01277	-		-	gmx:100793593	761.911

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