Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01255 ATGCCATTGATCACAAATCCATTACTTGAAAGGGCCACGTGTGTTATTGTTGCTAGGCACGGGATCGGAGATGAAAGTGAAGATCTTGCTAAATGGCACGGTATTGTTTCGTGGACTTGGGATGCTCAAGATGAAACGTGTGGGATCTGTAGAATGGCCTTTGATGGATGTTGTCCAGACTGTAAACTTCCAGGGGATGACTGTCCTCTGATTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTTAATTCTCAAACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATGGCAGTTTAAAGGATAA 327 0.4495 MPLITNPLLERATCVIVARHGIGDESEDLAKWHGIVSWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01255 108 FunFam Anaphase-promoting complex subunit 11 26 108 - -
Viun7g01255 108 ProSiteProfiles Zinc finger RING-type profile. 58 101 IPR001841 -
Viun7g01255 108 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 29 107 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Viun7g01255 108 CDD RING-H2_APC11 44 106 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Viun7g01255 108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 108 IPR013083 -
Viun7g01255 108 PANTHER RING BOX 29 107 - -
Viun7g01255 108 SUPERFAMILY RING/U-box 29 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01255 Viun-Chr7 14313375 14316455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01255 58 101 C3H Transcription Factor Family AT1G72220 41.304 4.60e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01255 K03358 - vum:124845759 210.305