Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01245 ATGGTGTTTTTCTTGACTAAGGTCTCTGATTGGGTACTCCTGATTTTCCGAAAAGAATGGCACGGTATTGTTTCGTGGACTTGGGATGCTCAAGATGAAACGTGTGGGATCTGTAGAATGGCCTTTGATGGATGTTGTCCAGACTGTAAACTTCCAGGGGATGACTGTCCTCTGATTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTTAATTCTCAAACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATGGCAGTTTAAAGGATAA 291 0.4433 MVFFLTKVSDWVLLIFRKEWHGIVSWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01245 96 SUPERFAMILY RING/U-box 18 95 - -
Viun7g01245 96 PANTHER RING BOX 18 95 - -
Viun7g01245 96 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Viun7g01245 96 FunFam Anaphase-promoting complex subunit 11 13 96 - -
Viun7g01245 96 CDD RING-H2_APC11 32 94 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Viun7g01245 96 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 96 IPR013083 -
Viun7g01245 96 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 18 95 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01245 Viun-Chr7 14266356 14268469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01245 46 89 C3H Transcription Factor Family AT1G72220 41.304 1.19e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01245 K03358 - gmx:100776546 195.282