Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01180 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATAGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTGTTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAAAACCATCGACCGGTCAGAAAACCGCCGAATACGTTGGTTTCCGGCGGAGTCACTCCGGCGAGGGAGATTCGATACTCTGAAGCAGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCAAGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGTGCCGACATACTGAACCCGCCGACAAACGTAATAGCGAGTCAGAACCAAAACAGCGCCGCCGTGCAATCCTCCGTTCGCACCACGGAGCTCCGGCATCCGGCACCTCGGCCGCCGATTCCGCCGTCTCGGCGGCAGGTGCCGGCGGCAAACAGGATGCAGAATTTCGCACACTTCTCGAACCACGCCAATGCGTCGTCGAGTTCGAAGACAACGACGGCGCAGCCGACGGTGGTGGATTCGTGCGAGACGCCCGTCGCGACGGCGGAGCACGCTGAAACTGGTCGCGCAAGCGTGACCCCCGCTGATGCAGGTAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAAGTGGACCGGAAGAGGAAGGGGAGAGAACCGGACGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAAGTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGGTCATTTGGGACCGAGGTTTCCCCCTATGCCTCCTTTCCATATTCCCCATGTTTCTGCCCCTGATTCATCCAGAATGGCAGCACCAAATCTGTCAGATAATGGTATGCTTAACGCACTTGGAACGCAAGGTCCAGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTGAGCAAGCCTACTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGACGAAACATGA 1512 0.5126 MNHCVPDFEIQIDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMQSQNHRPVRKPPNTLVSGGVTPAREIRYSEAENYGNQHLFMQEDEMASWLHYPIQEDPPPFDHHDFCADILNPPTNVIASQNQNSAAVQSSVRTTELRHPAPRPPIPPSRRQVPAANRMQNFAHFSNHANASSSSKTTTAQPTVVDSCETPVATAEHAETGRASVTPADAGKAAESGGRETATCDVTVTSSPGGSSGSAEPVQREVDRKRKGREPDESEFQSEDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMNRPVMPFPNMLSSSTLPAATAAGHLGPRFPPMPPFHIPHVSAPDSSRMAAPNLSDNGMLNALGTQGPDQSRIPNFTDPYQQYVGLQQVQLQLMQAMNQPNVSKPTTSRGQENPEKHQSDET 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01180 503 Pfam Helix-loop-helix DNA-binding domain 295 341 IPR011598 GO:0046983
Viun7g01180 503 MobiDBLite consensus disorder prediction 425 457 - -
Viun7g01180 503 SMART finulus 297 346 IPR011598 GO:0046983
Viun7g01180 503 MobiDBLite consensus disorder prediction 476 503 - -
Viun7g01180 503 FunFam Basic helix-loop-helix transcription factor 286 349 - -
Viun7g01180 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Viun7g01180 503 MobiDBLite consensus disorder prediction 476 490 - -
Viun7g01180 503 MobiDBLite consensus disorder prediction 132 158 - -
Viun7g01180 503 MobiDBLite consensus disorder prediction 197 300 - -
Viun7g01180 503 PANTHER TRANSCRIPTION FACTOR PIF3 23 180 IPR044273 GO:0003700|GO:0006355
Viun7g01180 503 CDD bHLH_AtPIF_like 291 354 IPR047265 -
Viun7g01180 503 Coils Coil 297 317 - -
Viun7g01180 503 MobiDBLite consensus disorder prediction 247 263 - -
Viun7g01180 503 MobiDBLite consensus disorder prediction 227 243 - -
Viun7g01180 503 Gene3D - 286 349 IPR036638 GO:0046983
Viun7g01180 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 369 IPR036638 GO:0046983
Viun7g01180 503 MobiDBLite consensus disorder prediction 429 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01180 Viun-Chr7 13349132 13354677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01180 1 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.953 8.91e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01180 HLH 6.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01180 - - gmx:100788491 672.93