Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01179 ATGCTTCAACTCAACAGAACCAAAATGAATCACTGTGTTCCAGATTTCGAAATCCAAATAGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTGTTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAAAACCATCGACCGGTCAGAAAACCGCCGAATACGTTGGTTTCCGGCGGAGTCACTCCGGCGAGGGAGATTCGATACTCTGAAGCAGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCAAGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGTGCCGACATACTGAACCCGCCGACAAACGTAATAGCGAGTCAGAACCAAAACAGCGCCGCCGTGCAATCCTCCGTTCGCACCACGGAGCTCCGGCATCCGGCACCTCGGCCGCCGATTCCGCCGTCTCGGCGGCAGGTGCCGGCGGCAAACAGGATGCAGAATTTCGCACACTTCTCGAACCACGCCAATGCGTCGTCGAGTTCGAAGACAACGACGGCGCAGCCGACGGTGGTGGATTCGTGCGAGACGCCCGTCGCGACGGCGGAGCACGCTGAAACTGGTCGCGCAAGCGTGACCCCCGCTGATGCAGGTAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAAGTGGACCGGAAGAGGAAGGGGAGAGAACCGGACGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAAGTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGGTCATTTGGGACCGAGGTTTCCCCCTATGCCTCCTTTCCATATTCCCCATGTTTCTGCCCCTGATTCATCCAGAATGGCAGCACCAAATCTGTCAGATAATGGTATGCTTAACGCACTTGGAACGCAAGGTCCAGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTGAGCAAGCCTACTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGACGAAACATGA 1536 0.5104 MLQLNRTKMNHCVPDFEIQIDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMQSQNHRPVRKPPNTLVSGGVTPAREIRYSEAENYGNQHLFMQEDEMASWLHYPIQEDPPPFDHHDFCADILNPPTNVIASQNQNSAAVQSSVRTTELRHPAPRPPIPPSRRQVPAANRMQNFAHFSNHANASSSSKTTTAQPTVVDSCETPVATAEHAETGRASVTPADAGKAAESGGRETATCDVTVTSSPGGSSGSAEPVQREVDRKRKGREPDESEFQSEDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMNRPVMPFPNMLSSSTLPAATAAGHLGPRFPPMPPFHIPHVSAPDSSRMAAPNLSDNGMLNALGTQGPDQSRIPNFTDPYQQYVGLQQVQLQLMQAMNQPNVSKPTTSRGQENPEKHQSDET 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01179 511 Gene3D - 294 357 IPR036638 GO:0046983
Viun7g01179 511 MobiDBLite consensus disorder prediction 484 498 - -
Viun7g01179 511 MobiDBLite consensus disorder prediction 433 465 - -
Viun7g01179 511 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Viun7g01179 511 MobiDBLite consensus disorder prediction 484 511 - -
Viun7g01179 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 377 IPR036638 GO:0046983
Viun7g01179 511 PANTHER TRANSCRIPTION FACTOR PIF3 30 192 IPR044273 GO:0003700|GO:0006355
Viun7g01179 511 MobiDBLite consensus disorder prediction 142 166 - -
Viun7g01179 511 MobiDBLite consensus disorder prediction 205 308 - -
Viun7g01179 511 SMART finulus 305 354 IPR011598 GO:0046983
Viun7g01179 511 CDD bHLH_AtPIF_like 299 362 IPR047265 -
Viun7g01179 511 MobiDBLite consensus disorder prediction 255 271 - -
Viun7g01179 511 Coils Coil 305 325 - -
Viun7g01179 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Viun7g01179 511 MobiDBLite consensus disorder prediction 235 251 - -
Viun7g01179 511 FunFam Basic helix-loop-helix transcription factor 294 357 - -
Viun7g01179 511 MobiDBLite consensus disorder prediction 437 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01179 Viun-Chr7 13349132 13354678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01179 9 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.953 8.94e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01179 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01179 - - gmx:100788491 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01179 7 13349132 13354678 Viun7g01179 7 13349132 13354678 ECH
Viun1g02216 1 33237206 33241587 Viun7g01179 7 13349132 13354678 PCT