Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01178 ATGCTTCAACTCAACAGAACCAAAATGAATCACTGTGTTCCAGATTTCGAAATCCAAATAGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTGTTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAAAACCATCGACCGGTCAGAAAACCGCCGAATACGTTGGTTTCCGGCGGAGTCACTCCGGCGAGGGAGATTCGATACTCTGAAGCAGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCAAGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGTGCCGACATACTGAACCCGCCGACAAACGTAATAGCGAGTCAGAACCAAAACAGCGCCGCCGTGCAATCCTCCGTTCGCACCACGGAGCTCCGGCATCCGGCACCTCGGCCGCCGATTCCGCCGTCTCGGCGGCAGGTGCCGGCGGCAAACAGGATGCAGAATTTCGCACACTTCTCGAACCACGCCAATGCGTCGTCGAGTTCGAAGACAACGACGGCGCAGCCGACGGTGGTGGATTCGTGCGAGACGCCCGTCGCGACGGCGGAGCACGCTGAAACTGGTCGCGCAAGCGTGACCCCCGCTGATGCAGGTAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAAGTGGACCGGAAGAGGAAGGGGAGAGAACCGGACGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAAGTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGGTCATTTGGGACCGAGGTTTCCCCCTATGCCTCCTTTCCATATTCCCCATGTTTCTGCCCCTGATTCATCCAGAATGGCAGCACCAAATCTGTCAGATAATGGTATGCTTAACGCACTTGGAACGCAAGGTCCAGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGCAATGAACCAACCAAATGTGAGCAAGCCTACTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGACGAAACATGA 1515 0.5122 MLQLNRTKMNHCVPDFEIQIDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMQSQNHRPVRKPPNTLVSGGVTPAREIRYSEAENYGNQHLFMQEDEMASWLHYPIQEDPPPFDHHDFCADILNPPTNVIASQNQNSAAVQSSVRTTELRHPAPRPPIPPSRRQVPAANRMQNFAHFSNHANASSSSKTTTAQPTVVDSCETPVATAEHAETGRASVTPADAGKAAESGGRETATCDVTVTSSPGGSSGSAEPVQREVDRKRKGREPDESEFQSEDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMNRPVMPFPNMLSSSTLPAATAAGHLGPRFPPMPPFHIPHVSAPDSSRMAAPNLSDNGMLNALGTQGPDQSRIPNFTDPYQQYVGLQQAMNQPNVSKPTTSRGQENPEKHQSDET 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01178 504 MobiDBLite consensus disorder prediction 433 504 - -
Viun7g01178 504 Gene3D - 294 357 IPR036638 GO:0046983
Viun7g01178 504 MobiDBLite consensus disorder prediction 142 166 - -
Viun7g01178 504 MobiDBLite consensus disorder prediction 437 491 - -
Viun7g01178 504 MobiDBLite consensus disorder prediction 205 308 - -
Viun7g01178 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 377 IPR036638 GO:0046983
Viun7g01178 504 SMART finulus 305 354 IPR011598 GO:0046983
Viun7g01178 504 CDD bHLH_AtPIF_like 299 362 IPR047265 -
Viun7g01178 504 PANTHER TRANSCRIPTION FACTOR PIF3 30 192 IPR044273 GO:0003700|GO:0006355
Viun7g01178 504 MobiDBLite consensus disorder prediction 255 271 - -
Viun7g01178 504 Coils Coil 305 325 - -
Viun7g01178 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Viun7g01178 504 MobiDBLite consensus disorder prediction 235 251 - -
Viun7g01178 504 FunFam Basic helix-loop-helix transcription factor 294 357 - -
Viun7g01178 504 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01178 Viun-Chr7 13349132 13354683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01178 9 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.953 9.62e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01178 HLH 6.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01178 - - gmx:100788491 677.552