Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01151 ATGGCGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCACAGGCGGCGAACAAGATCTGCGTTGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCCGTTTCGTACGGCGTCTTCATGTGTCTGGAGTGCTCCGGCAAGCACCGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCTGGCGGCAACGATAAGCTCAACTCCTTCCTCGCTCAGTACTCCATCCCCAAGGAGACAGACATCGTCACTAAATACAACACCAACGCCGCCGCCGTCTACCGCGACCGGATCCAGGCCATCGCCGACGGCCGTCCATGGCGCGATCCGCCGGTAGTGAAGGAAAACCTCTCAGCAGGCAAGGGGAAGCCGCCGCTAACGCAGACACAGACGCGAAGAGCTAACGGGGGAGGATGGGACGATTGGGACAATGAGGGGAGTTCGGCGGACATCCGGAGCAGGTCAACCGGGGACTTCAGGAGCTTGAACGGCGCGGGTGCGCCTGCGAGGTCGAGGTCGACGGAGGACATCACGCGGTCCCAGCTGGAGGCGTCGGCGGCAAACAAGGAAAGCTTCTTCGCGAGGAAGATGGCGGAGAACGAGTCGCGGCCTGAGGGGCTTCCGCCGTCGCAGGGAGGGAAGTACGTAGGGTTCGGGTCCACTCCGCCGCCTCAGCGGAGGAACGATGCTCAAAACGATTATTTATCTGTCGTTTCGCAGGGTATTGGGAAATTGTCTTTGGTTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCTGGCACGAAGGAGATCACTTCAAAGGTCAAGGAAGGTGGTTATGATCACAAGGTTAATGAAACTGTCACTGTTGTCACTCAAAAGACATCAGAGATTGGACAGAGGACTTGGGGCATAATGAAAGGAGTTATGGCCATGGCCTCCCAGAAGATCGAGGAGTACACTAAAGATGATACAAACTGGAAGACTGATAACTGGCAACGAAATGAGAGTGATAGAAATGGTTATTATCAGGATTTTAACCAACAGAACCAAGGCTCGAATTCTGCTCCTGGAAGAGAACAATCTTCATCAGGGCAATATAAAACTCATCGCTCAAGCTCTTTGGATGATTGGGATCACCGAGGTAGCAGGAAGGAAGAACCAGCTAAAGGATCAACTCCCTATTCATCAGGTGGGCAGTCTAGTACCTACAACTCTAGCTCTTGGGACGATTGGGAACAAACAGATTCTAGGAAGCAAGAACCAGCTAAAGGATCAGCTCCTCATAATAATGATGATTGGGCTGGCTGGGATATTGCCAAAGATGATGGATTTGATCATTTTTACCAAGGTGCGTCTAATAAGAAAGGTGTTGGTGTTGGTCATAATGGAAAATCGGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1461 0.5332 MAAASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNSFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLSAGKGKPPLTQTQTRRANGGGWDDWDNEGSSADIRSRSTGDFRSLNGAGAPARSRSTEDITRSQLEASAANKESFFARKMAENESRPEGLPPSQGGKYVGFGSTPPPQRRNDAQNDYLSVVSQGIGKLSLVAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTKDDTNWKTDNWQRNESDRNGYYQDFNQQNQGSNSAPGREQSSSGQYKTHRSSSLDDWDHRGSRKEEPAKGSTPYSSGGQSSTYNSSSWDDWEQTDSRKQEPAKGSAPHNNDDWAGWDIAKDDGFDHFYQGASNKKGVGVGHNGKSDGTWTEGGFL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01151 486 CDD ArfGap_ArfGap1 4 118 - -
Viun7g01151 486 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Viun7g01151 486 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Viun7g01151 486 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Viun7g01151 486 MobiDBLite consensus disorder prediction 119 244 - -
Viun7g01151 486 Pfam Putative GTPase activating protein for Arf 6 106 IPR001164 GO:0005096
Viun7g01151 486 MobiDBLite consensus disorder prediction 403 421 - -
Viun7g01151 486 MobiDBLite consensus disorder prediction 346 381 - -
Viun7g01151 486 MobiDBLite consensus disorder prediction 463 486 - -
Viun7g01151 486 FunFam ADP-ribosylation factor GTPase-activating protein 1 130 - -
Viun7g01151 486 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Viun7g01151 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 IPR044519 GO:0005096|GO:0016192
Viun7g01151 486 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Viun7g01151 486 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Viun7g01151 486 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
Viun7g01151 486 MobiDBLite consensus disorder prediction 187 201 - -
Viun7g01151 486 MobiDBLite consensus disorder prediction 382 398 - -
Viun7g01151 486 MobiDBLite consensus disorder prediction 422 436 - -
Viun7g01151 486 MobiDBLite consensus disorder prediction 337 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01151 Viun-Chr7 12957386 12961289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01151 6 92 C2H2 Transcription Factor Family AT4G21160 50.000 1.01e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01151 K12492 - gmx:100792658 821.617