Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01129 ATGAAGAGACAGAGAGAAGAGAGCGTAGATTTGGCAAATTGTGTAGTGCTACTCTCTCATCCCAGAGAAATCAAACGTCACAAACGTTTGGGGCCGGTGGAATTTGAGTGCAGAACCTGCAACCGTAAGTTTTCTTCGTTTCAAGCACTTGGTGGGCACAGGGCCAGCCACAAAACGGCGAAACAAGAGGTGAAAGAAGAGGAAAAGATTGTGAGATTGGGAAATAAGAGGAAAAAGCACGAGTGCTCCATTTGTGGTCAAGAATTTTCTCTGGGTCAGGCACTGGGAGGACACATGAAAAGGCATAGAATTTCGCTAAACGAAGGGTTTTCTTCAATAAATCAGGCTCTGGTAAAGGTCCCGGTTCTTAAAAGGTCGAATAGTAGGAGGGTTATGTGCTTGGACTTGAACTTGACCCCTCTGCAGAATGACTTGAAGCTATTGTTTGGCGATAAAGCACCCACAGTTGATTCCTTCGTCTGA 483 0.4534 MKRQREESVDLANCVVLLSHPREIKRHKRLGPVEFECRTCNRKFSSFQALGGHRASHKTAKQEVKEEEKIVRLGNKRKKHECSICGQEFSLGQALGGHMKRHRISLNEGFSSINQALVKVPVLKRSNSRRVMCLDLNLTPLQNDLKLLFGDKAPTVDSFV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01129 160 PANTHER ZINC FINGER PROTEIN ZAT5 4 144 - -
Viun7g01129 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Viun7g01129 160 Gene3D Classic Zinc Finger 55 133 - -
Viun7g01129 160 Gene3D Classic Zinc Finger 34 54 - -
Viun7g01129 160 SUPERFAMILY beta-beta-alpha zinc fingers 35 102 IPR036236 -
Viun7g01129 160 Pfam C2H2-type zinc finger 35 58 - -
Viun7g01129 160 Pfam C2H2-type zinc finger 80 104 - -
Viun7g01129 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Viun7g01129 160 SMART c2h2final6 80 102 IPR013087 -
Viun7g01129 160 SMART c2h2final6 35 57 IPR013087 -
Viun7g01129 160 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Viun7g01129 160 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01129 Viun-Chr7 12468654 12469362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01129 1 157 C2H2 Transcription Factor Family AT2G37430 47.126 4.03e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g01129 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01129 - - gmx:100793243 250.751