Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01127 ATGGTAGTCATTCTGAAGAGACAGGGAGAAAAGGAATCACAAGAGATTAAGGATTTGGTGAAGAGTTTTACGCCACAGGAGTTCCAGTGCAAGACGTGTAACCGCAAATTCTCGTCGTTCCAAGCGCTCGGCGGCCACCGGGCCAGCCACAAAAAGCCCAAGTTGGAGGGAGATCTGAGTCAGGACCGGAAGCCCAAAACCCACGAGTGTTCCATTTGCGGGCGGGGATTCTCGTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACACAGGGATGCCGTGAACGAAGGGTTTTCTTCAGTTATCGCGGAAGCACCGCTTCTGAAACGTTCGAATAGCAGCAAGAGGGTGATGTGCTTGGAGTTGGATCTGAACCTAACGCCGTTGGAAAATGACTTGAAGTTGCTGTTCGGAAACAAGGCTCCTACGGTGCATCTTTCCTTGTAG 447 0.5213 MVVILKRQGEKESQEIKDLVKSFTPQEFQCKTCNRKFSSFQALGGHRASHKKPKLEGDLSQDRKPKTHECSICGRGFSLGQALGGHMRKHRDAVNEGFSSVIAEAPLLKRSNSSKRVMCLELDLNLTPLENDLKLLFGNKAPTVHLSL 148
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01127 148 MobiDBLite consensus disorder prediction 49 65 - -
Viun7g01127 148 SUPERFAMILY beta-beta-alpha zinc fingers 28 90 IPR036236 -
Viun7g01127 148 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Viun7g01127 148 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Viun7g01127 148 Pfam C2H2-type zinc finger 68 92 - -
Viun7g01127 148 Pfam C2H2-type zinc finger 28 53 - -
Viun7g01127 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Viun7g01127 148 MobiDBLite consensus disorder prediction 43 65 - -
Viun7g01127 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Viun7g01127 148 PANTHER ZINC FINGER PROTEIN ZAT5 24 132 - -
Viun7g01127 148 FunFam Zinc finger protein 64 91 - -
Viun7g01127 148 Gene3D Classic Zinc Finger 57 120 - -
Viun7g01127 148 Gene3D Classic Zinc Finger 26 48 - -
Viun7g01127 148 SMART c2h2final6 28 50 IPR013087 -
Viun7g01127 148 SMART c2h2final6 68 90 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun7g01127 Viun-Chr7 12443060 12443742 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01127 20 138 C2H2 Transcription Factor Family AT2G37430 56.589 6.84e-42 135
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g01127 zf-C2H2_6 4.2e-10 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01127 - - vra:106771374 244.588