Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01113 ATGGGTAACGCCCATGGACACCGCCATCGGAAACACCCCAACTCCGTTCCTCCGCCCCATAAATACGATCACCCTCCACCATTCCCAACCCCACCACCACCCATAGCCAATTCCAACATGCTATCTCTCCCTTACACCCACGTCGACACCACCCTCCGCGCCCTCGCCGGCCAAGCCGAGGGCTTCGGCCGCTTCGCTGTCGGTGGCCTCCACGGTCCCGTTCACCGCGTCACATCGCTCGCAGATGATGGACCGGGGTCGCTGCGTGAGGCGTGTCGCCGAAAAGAACCGTTGTGGATTGTGTTTGAGGTTTCCGGCACCATTCATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAGACCATCGACGGTCGTGGGCAGAGGATTAAACTTACCGGAAAAGGGTTGCGCCTGAAGGAATGCGAACACGTCATAATCTGCAATTTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGACGCCATTCAGATCAAACCTAATTCCAAACACATATGGATTGATCGTTGCACGCTCGCTGATTATGATGACGGCCTTATAGACATCACACGAGAAAGCACAGACATTACTGTCTCAAGGTGTCACTTCTCTCAGCATGATAAAACCATGCTTATTGGGGCTGATCCATCGCATGTTAACGATAGGTGCATGAGGGTGACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTTTGCCAAAGTGCATCTCTATAATAATTATACCAGAAACTGGGGCATATATGCTGTGTGTGCTAGTGTGGAAGCCCAGATATTCTCGCAGCATAATATCTATGAAGCGGGACAGAAGAAGGTGGCCTTTAAGTACCTTACTGAGAAGGCAGCAGACAAGGAAGTGGGAACAAGTGGCTACATAAGGTCTGAGGGAGACTTATTCTTAAATGGTGCTGAAGCAGGGTTAATGAGTGAGAATGGAGGATGCAACATGTTTCACCCCACTGAACACTATCCCTCATGGACAGTGGAAGCCCCCAGAGAGGATCTTAAACACATTCTTCATCACTGCACTGGATGGCAATCTGTTGCTAGGCCACCAGATCAAGCATTATGA 1107 0.5086 MGNAHGHRHRKHPNSVPPPHKYDHPPPFPTPPPPIANSNMLSLPYTHVDTTLRALAGQAEGFGRFAVGGLHGPVHRVTSLADDGPGSLREACRRKEPLWIVFEVSGTIHLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLADYDDGLIDITRESTDITVSRCHFSQHDKTMLIGADPSHVNDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVEAQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGTSGYIRSEGDLFLNGAEAGLMSENGGCNMFHPTEHYPSWTVEAPREDLKHILHHCTGWQSVARPPDQAL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01113 368 SUPERFAMILY Pectin lyase-like 56 358 IPR011050 -
Viun7g01113 368 MobiDBLite consensus disorder prediction 1 15 - -
Viun7g01113 368 MobiDBLite consensus disorder prediction 19 35 - -
Viun7g01113 368 Pfam Pectate lyase 113 276 IPR002022 -
Viun7g01113 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Viun7g01113 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Viun7g01113 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Viun7g01113 368 SMART amb_all 85 283 IPR002022 -
Viun7g01113 368 PANTHER PECTATE LYASE 18-RELATED 48 321 IPR045032 GO:0030570
Viun7g01113 368 MobiDBLite consensus disorder prediction 1 35 - -
Viun7g01113 368 Gene3D - 44 349 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01113 Viun-Chr7 12096387 12099502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01113 80 368 Polysaccharide Lyase AT3G55140 76.817 4.25e-172 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01113 K01728 - gmx:100814368 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01113 7 12096387 12099502 Viun7g01113 7 12096387 12099502 ECH