Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01098 ATGGAAGAAACATCAACATCTATCATCATGGCGGCACTCTCCACCCTCACCCCTTCCCAATTCTCAGATCTCACGCACTCCATTCTATCCACTACGCTCCACCACCATCGCCGCCTCGCCTTCCTCCTTTCTTCCCCAACGCTCTTCTCTCTAACCCTCCACCACCTCCACAACCTCTCCCTCCCCCAGAAGACGCTCCTCATCGCCCGCCACCTTCTCTCCTCTCTCCACCTCCTCACCGCCACCTCCCCGCCGCCGTCCACAACCACGAGGCAGCGCGACCTCGACGCTGCGCTCCTCCTCCTCCTCCTCTGCGAAACGCACAACCACAATCCACATGCCCTCGAGGCACCCTTTTCCCAATGGAGGGTCAACCTCAGCACCATCTTCTCCGATTCATTGTTGACTCTTTCCTTTGCACCCTTTGGGTCATGCACGGTGCTGATTCCCTTCGTTGAGACCGTGACGCGGTGCTGGAGACTCGTCGGTGCACTGGACTGCGGCGGAGGAAAGGAATCGGGGGAGGTGGCTGCATCGGCTACGGCGGTGGTGGCGCTGCCATCGGTGGAGGTGAGGACCGGTGGGATAGAGTGTGCGATATGCAGAGAGGAGATGACAATAGGGAGAGACGTATGCGAGTTGCCATGTCAGCACTTGTTTCATTGGGTGTGTATCTTACCCTGGCTTGGGAAGAGGAACACGTGTCCTTGCTGCAGATTTCGGTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGAAATCTTGGTTAAAACGGCTGCAAAAGATTCGTAG 801 0.573 MEETSTSIIMAALSTLTPSQFSDLTHSILSTTLHHHRRLAFLLSSPTLFSLTLHHLHNLSLPQKTLLIARHLLSSLHLLTATSPPPSTTTRQRDLDAALLLLLLCETHNHNPHALEAPFSQWRVNLSTIFSDSLLTLSFAPFGSCTVLIPFVETVTRCWRLVGALDCGGGKESGEVAASATAVVALPSVEVRTGGIECAICREEMTIGRDVCELPCQHLFHWVCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEILVKTAAKDS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01098 266 SMART ring_2 198 238 IPR001841 -
Viun7g01098 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 245 IPR013083 -
Viun7g01098 266 SUPERFAMILY RING/U-box 194 244 - -
Viun7g01098 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 133 243 - -
Viun7g01098 266 Pfam Ring finger domain 197 239 IPR001841 -
Viun7g01098 266 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Viun7g01098 266 CDD RING-H2_PA-TM-RING 197 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01098 Viun-Chr7 11784486 11785809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01098 1 262 C3H Transcription Factor Family AT5G02750 51.613 1.26e-82 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01098 - - gmx:100810879 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01098 7 11784486 11785809 Viun7g01098 7 11784486 11785809 ECH