Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01039 ATGAACTCCAACACTTTGAATTCTCAGTCAATGGCGGCGGCGGTGGCGGCGAGTGATGGGTCGGGGAAGAAGGTGAGAAAGCCTTACACCATAACCAAGTCAAGGGAGAGTTGGACGGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAAAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGTCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCTCATGTGCCTCCTCCCCGTCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAAGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCTTCAACAAACATGCTTGCACCTGGGTTTGCCACATGGGATGAAACCTCCTTGCTGATGAATACAGGGGCCAGTAAATCCATGACCTGTCAGGATGAACCCAACAACATTCGTGGAAATGAAGCTGATATTGGATCAAAGGGGATGCCAAAGATTACCAACAGCAGTCTCAGTGGTGTCAGAAATTCTACTAGAACACTACCGTCTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCGGTTCTTCATGGTTTGCCAGATTTTGCTGAAGTTTATAGTTTCATTGGAAGTGTATTTGATCCAGATACAAATGACCATGTCCAAAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTATTATTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGCATTGTCAACATATGATGTGAATGGCATGGCAGTAGGAGTTGGTACAGGAATTGATGTGAAGAAGAATACAAATGATCTATCATGTCAAACTGCTTAA 897 0.4259 MNSNTLNSQSMAAAVAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSTNMLAPGFATWDETSLLMNTGASKSMTCQDEPNNIRGNEADIGSKGMPKITNSSLSGVRNSTRTLPSSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKALSTYDVNGMAVGVGTGIDVKKNTNDLSCQTA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01039 298 PANTHER SWI/SNF COMPLEX-RELATED 19 257 - -
Viun7g01039 298 ProSiteProfiles SANT domain profile. 33 86 IPR017884 -
Viun7g01039 298 MobiDBLite consensus disorder prediction 1 15 - -
Viun7g01039 298 CDD SANT 37 80 IPR001005 -
Viun7g01039 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 82 IPR006447 GO:0003677
Viun7g01039 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Viun7g01039 298 Gene3D - 38 85 - -
Viun7g01039 298 MobiDBLite consensus disorder prediction 164 202 - -
Viun7g01039 298 FunFam protein REVEILLE 6 isoform X1 37 85 - -
Viun7g01039 298 ProSiteProfiles Myb-like domain profile. 30 80 IPR001005 -
Viun7g01039 298 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
Viun7g01039 298 SUPERFAMILY Homeodomain-like 29 85 IPR009057 -
Viun7g01039 298 MobiDBLite consensus disorder prediction 173 197 - -
Viun7g01039 298 MobiDBLite consensus disorder prediction 1 28 - -
Viun7g01039 298 SMART sant 34 82 IPR001005 -
Viun7g01039 298 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01039 Viun-Chr7 10883071 10888722 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun7g01039 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01039 - - vra:106754423 561.607