Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01003 ATGATGAAGATCATCAAAGGAAATCGCAACAAGCGTCAAAGGGAACCCTCTTTTGCAAACCCTACTTCAATAACCTCAACCAGCACCAACAATTCCATTGATAGTGCCACAACCTCCACCACCACCACCACCACCCCAATTGAATCCATAGAAGAAGAACAAGACATGGTGAATTGTCTCATTCTCCTAGCTCAAGGCACACACAACATCACCCACAAAAGCTCCACAAACACTCGAGTCTTCCGCTGCAAGACTTGCGACAAATGCTTCCCTTCGTTCCAGTCGCTTGGAGGACACAGAACCAGCCACAGGAAGCCCAAGCACTACACCACTCATGATGTTGAACCAGTTACTGCTACTACTTCTGTTAGAGATAATGATCTCACTACAAGCACCACTCTCTCCTTGAAACCACCGAGTAGGGTTAATAATTTCACCGTCGCCACCAGAGTTCACCGGTGTTCAACCTGTTACGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCATAGAAATCTTGTGAATGCTTCTTCAACAACTTCCATGAGTTGTGGTGATGATCGTGGTGGTAGCCAAGAATGCCATGGAGACAAGAAACCCTTGAATTGGGACTTGAATCTTCCTGCGCCAGAGGAGGATCTTGGGGAATCCAAGTTTTCGTTTCAGCGAAGAGAAAACGTTATTGTGTTCTCTTCTTCTTTGGTGAATTGCAATTACTGA 732 0.4658 MMKIIKGNRNKRQREPSFANPTSITSTSTNNSIDSATTSTTTTTTPIESIEEEQDMVNCLILLAQGTHNITHKSSTNTRVFRCKTCDKCFPSFQSLGGHRTSHRKPKHYTTHDVEPVTATTSVRDNDLTTSTTLSLKPPSRVNNFTVATRVHRCSTCYAEFSSGQALGGHMRRHRNLVNASSTTSMSCGDDRGGSQECHGDKKPLNWDLNLPAPEEDLGESKFSFQRRENVIVFSSSLVNCNY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01003 243 MobiDBLite consensus disorder prediction 14 47 - -
Viun7g01003 243 Pfam C2H2-type zinc finger 151 175 - -
Viun7g01003 243 Pfam C2H2-type zinc finger 80 106 - -
Viun7g01003 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 174 IPR013087 -
Viun7g01003 243 MobiDBLite consensus disorder prediction 1 47 - -
Viun7g01003 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Viun7g01003 243 PANTHER ZINC FINGER PROTEIN ZAT5 14 224 - -
Viun7g01003 243 SMART c2h2final6 81 103 IPR013087 -
Viun7g01003 243 SMART c2h2final6 152 174 IPR013087 -
Viun7g01003 243 MobiDBLite consensus disorder prediction 181 206 - -
Viun7g01003 243 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Viun7g01003 243 Gene3D Classic Zinc Finger 79 174 - -
Viun7g01003 243 SUPERFAMILY beta-beta-alpha zinc fingers 76 110 IPR036236 -
Viun7g01003 243 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01003 Viun-Chr7 10339603 10340781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01003 1 243 C2H2 Transcription Factor Family AT5G03510 34.286 6.47e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g01003 zf-C2H2_6 6.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01003 - - pvu:PHAVU_007G151700g 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01003 7 10339603 10340781 Viun1g02413 1 34583968 34585038 ECH
Viun7g01003 7 10339603 10340781 Viun7g01003 7 10339603 10340781 ECH
Viun7g01003 7 10339603 10340781 Viun5g03323 5 43665271 43666504 ECH
Viun1g02413 1 34583968 34585038 Viun7g01003 7 10339603 10340781 PCT