Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01000 ATGGTTCAAACCTACATTTTGCTCTTCTTCTCCGTTTTGCCCTCGTTTTTACCTCATGGAACAGCAGCACTCAACCTCACTCTCCCAGGCCAACATCCAGACCCGGAAGCTGTTGCAACAGAAGTTCATAGGAGGGTGAATGTTTCCATGGGAAGAAGGGAAATGCTGAGGTTGTCTGAGAAAGATGAAGCACCATGTCTCACAGGGAACCCCATTGATGATTGTTGGAAGTGTGACTCAGATTGGGCCAGCAACAGACAGAGGCTAGCTGATTGTGCAATTGGGTTTGGGCAGAACGCAAAGGGTGGAAAAGGTGGACAATTTTACATAGTCACTGATTCATCTGATGAGGATCCTGTGAACCCAAAACCAGGAACACTTAGACATGCAGTGATACAGAATGAACCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAACAGCTTCAAAACCATTGATGGGCGTGGCGCTGATGTGCACATCGTGGGTGGAGGCTGCATCACTCTTCAGTATATTAACAATGTCATTATTCACAACATTCACATCCACCATTGCCATCCCTCTGGTAATGCTGACGTGCGGTCGAGTCCAGAGCACTACGGGTACCGAACAGAATCAGACGGCGATGGAATCTCGATCTTCTCGTCGCGCGACATCTGGATCGATCACTGCACGCTATCGCGGTGCAAGGACGGCCTGATCGACGCGGTGATGGGTTCGACGGCAATAACGATCTCGAACAACCACTTTTCGCACCACAACGACGTGATGCTCTTAGGCCACAACGACGACTACCTGCCAGACTCGGCGATGCAGGTGACGATCGCGTTCAACCACTTCGGGGAGAATCTGGTGCAGCGCATGCCGCGTTGCAGACTAGGTTACTTTCACGTGGTGAACAACGACTTCACGCGATGGGAGATGTACGCGATCGGAGGAAGTGCGAGGCCTACGATTAACAGCCAGGGAAACCGCTACACTGCGCCGGAAGATCCGGACGCGAAGCAGATTACGAAGAGGCTGGACGCCGGAGAAGGTGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGATGTGATGCTGAACGGCGCCTTTTTCGTGGCTTCAGGAGGTGAGGCCGGAACTGCCTACCAAAATGCGTACAGCGTTCAGCCTAAGAACGTGGAACGCATCTCGCTCCTCACAAATTCCGCTGGTGTTCTCGGCATTGCCAGGGACAATAATGTGGGAAAGTGGACGGATGATAAGTCCCAGAGTACAATGGCGGTGACACCTTCACGTACTTTCACTCTTCTCTCTGCATTTCTTGCTTTCTTCTTCTGCCTCTTATTTCATACAATTACCTTAACAAAACTTCTATAG 1389 0.5083 MVQTYILLFFSVLPSFLPHGTAALNLTLPGQHPDPEAVATEVHRRVNVSMGRREMLRLSEKDEAPCLTGNPIDDCWKCDSDWASNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDEDPVNPKPGTLRHAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYINNVIIHNIHIHHCHPSGNADVRSSPEHYGYRTESDGDGISIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHNDDYLPDSAMQVTIAFNHFGENLVQRMPRCRLGYFHVVNNDFTRWEMYAIGGSARPTINSQGNRYTAPEDPDAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGEAGTAYQNAYSVQPKNVERISLLTNSAGVLGIARDNNVGKWTDDKSQSTMAVTPSRTFTLLSAFLAFFFCLLFHTITLTKLL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01000 462 SMART amb_all 144 341 IPR002022 -
Viun7g01000 462 SUPERFAMILY Pectin lyase-like 61 409 IPR011050 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Viun7g01000 462 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Viun7g01000 462 FunFam Pectate lyase 69 411 - -
Viun7g01000 462 PANTHER PECTATE LYASE 18-RELATED 29 412 IPR045032 GO:0030570
Viun7g01000 462 Pfam Pectate lyase 154 333 IPR002022 -
Viun7g01000 462 Gene3D - 69 411 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01000 Viun-Chr7 10271912 10275653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01000 1 439 Polysaccharide Lyase AT3G53190 67.793 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01000 K01728 - gmx:100815062 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01000 7 10271912 10275653 Viun7g01000 7 10271912 10275653 ECH
Viun1g02409 1 34535203 34537893 Viun7g01000 7 10271912 10275653 PCT