Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00993 ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACATCATCCTCTCTCTTCTCCCAAATGCTTCTCCTCTTCTCTCTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAATCCACTTTCTCCCTACCCTCACGCTTCCTTCCCCGTGTCGCCGTCTCTGACTACGGCCAGCAAGAGGACACCTTCAGCGCCGGCCAGAGCTTCTCCCCCGACCTTAAGGTCTTTGTCGGCAACCTTCCGTTCAGCGTCGACAGTGCGCAGCTCGCAGAGCTCTTCGAAAGCGTTGGGGTCGTGGAGGTGGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGGTTTGGGTTTGTGACCATGTCTTCGGCTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCTTGAAAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCTTCTCGTTTTAGAAGTTCTAACAGAGTTGGTGGTGGTGGTGGTGGTGATTTTTCAGATAATAAACACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCACGTAGCGTTGGAGTCATTGTTTCGGGAACAAGGAAATGTCCTGGAAGCAAGGGTAGTCTATGACAGAGACAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTTCCGAAGAAGTTAACAGTGCAATTGAGTCCTTGGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTTTCGTTAGCAGATTCGAAGCCGAAGCGGTTTTGA 822 0.5073 MSTSATSLALPTLTLRTHHPLSSPKCFSSSLSLTPNAKPISISTVFLKSTFSLPSRFLPRVAVSDYGQQEDTFSAGQSFSPDLKVFVGNLPFSVDSAQLAELFESVGVVEVVEVIYDKTTGRSRGFGFVTMSSAEEVEAAVQQFNGYELDGRALKVNAGPPPARNESSSRFRSSNRVGGGGGGDFSDNKHKVHVGNLAWGVDHVALESLFREQGNVLEARVVYDRDSGRSRGFGFVTYSSSEEVNSAIESLDGVDLNGRAIRVSLADSKPKRF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00993 273 SMART rrm1_1 191 264 IPR000504 GO:0003723
Viun7g00993 273 SMART rrm1_1 84 157 IPR000504 GO:0003723
Viun7g00993 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Viun7g00993 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
Viun7g00993 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Viun7g00993 273 SUPERFAMILY RNA-binding domain, RBD 73 187 IPR035979 GO:0003676
Viun7g00993 273 CDD RRM2_NsCP33_like 191 266 - -
Viun7g00993 273 FunFam 28 kDa ribonucleoprotein, chloroplastic 183 272 - -
Viun7g00993 273 SUPERFAMILY RNA-binding domain, RBD 187 272 IPR035979 GO:0003676
Viun7g00993 273 MobiDBLite consensus disorder prediction 157 187 - -
Viun7g00993 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Viun7g00993 273 Gene3D - 63 186 IPR012677 -
Viun7g00993 273 Gene3D - 187 273 IPR012677 -
Viun7g00993 273 PANTHER OS02G0815200 PROTEIN 38 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00993 Viun-Chr7 10115048 10117191 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00993 68 272 Eukaryotic Initiation Factors Gene Family AT4G34110 27.317 8.91e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00993 - - var:108324910 430.254