Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00990 ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACATCATCCTCTCTCTTCTCCCAAATGCTTCTCCTCTTCTCTCTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAATCCACTTTCTCCCTACCCTCACGCTTCCTTCCCCGTGTCGCCGTCTCTGACTACGGCCAGCAAGAGGACACCTTCAGCGCCGGCCAGAGCTTCTCCCCCGACCTTAAGGTCTTTGTCGGCAACCTTCCGTTCAGCGTCGACAGTGCGCAGCTCGCAGAGCTCTTCGAAAGCGTTGGGGTCGTGGAGGTGGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGTTTTGGGTTTGTGACCATGTCTACGGCTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCTTGAAAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCATCTCGTTTTAGAAGTTCTAACAGAGGTGGTGGTGGTGATTTTTCAGATAGTAAACACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCACGCAGCATTGGAGTCATTGTTTCGGGAACAAGGAAATGTCCTGGAAGCAAGGGTAGTCTATGACAGAGACAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTCCCGATGAAGTCAGCAATGCAATTGAGTCCTTGGATGGAGTGGACTTGAATGGCAGAGCTATACGAGTTTCGTTAGCAGATTCGAAGCCGAAGCGGTTTTGA 813 0.5092 MSTSATSLALPTLTLRTHHPLSSPKCFSSSLSLTPNAKPISISTVFLKSTFSLPSRFLPRVAVSDYGQQEDTFSAGQSFSPDLKVFVGNLPFSVDSAQLAELFESVGVVEVVEVIYDKTTGRSRGFGFVTMSTAEEVEAAVQQFNGYELDGRALKVNAGPPPARNESSSRFRSSNRGGGGDFSDSKHKVHVGNLAWGVDHAALESLFREQGNVLEARVVYDRDSGRSRGFGFVTYSSPDEVSNAIESLDGVDLNGRAIRVSLADSKPKRF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00990 270 Gene3D - 184 269 IPR012677 -
Viun7g00990 270 Gene3D - 64 183 IPR012677 -
Viun7g00990 270 FunFam 28 kDa ribonucleoprotein, chloroplastic 180 269 - -
Viun7g00990 270 SUPERFAMILY RNA-binding domain, RBD 74 180 IPR035979 GO:0003676
Viun7g00990 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Viun7g00990 270 PANTHER OS02G0815200 PROTEIN 38 266 - -
Viun7g00990 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Viun7g00990 270 MobiDBLite consensus disorder prediction 155 185 - -
Viun7g00990 270 CDD RRM2_NsCP33_like 188 263 - -
Viun7g00990 270 SMART rrm1_1 188 261 IPR000504 GO:0003723
Viun7g00990 270 SMART rrm1_1 84 157 IPR000504 GO:0003723
Viun7g00990 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Viun7g00990 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
Viun7g00990 270 SUPERFAMILY RNA-binding domain, RBD 169 269 IPR035979 GO:0003676
Viun7g00990 270 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00990 Viun-Chr7 10066109 10068014 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00990 85 269 Eukaryotic Initiation Factors Gene Family AT4G34110 31.892 9.90e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00990 - - var:108324910 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00990 7 10066109 10068014 Viun7g00990 7 10066109 10068014 ECH