Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00980 ATGGATTGTGAAGATTATTTGCGGAAGTGTTCCAATAGGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGAAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTCCCCAGGATGGTAGCTTGGATTCTCATACAACTTTGAACAGGAAGGATGATTTGGAACTGGAGGTCCTTGATGGATTGCTAGATGATGTGGAAATCGATGATCTTGAAGGAGCTGACGGTTTCCCGGGTGCATGTGAAGAATATTTTTTGGATTTTGAATTTGCTGACAAATTTGAGGAGGTACTGGGTTCTGGTCCTTTTGAAGGTTCGGAAAGTCATTCTTCAGGATTAAGTAGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAGAAGTACCCATTGCACAATCTGAAAGCAAAAACGATTCTCTGGATGAGACACTAACCTATGAATCACATGGTGCCTTCAGCAACAATCCTAGTCAACCATCACAAGGAAATTGCAGGTACAACATTTCACTTGATATACAGCATCTTCAAGAGTTGGATAACTATCGTCATTTAGCTGGTCTGACTTATAAGAAGGAAAAGGGTCCTACCGAAAAAGGTCAACCTGCTGCACTGAGAGAGAAAAGATTCCGGAAGCCTACGCAAAGATATATTGAAGAATTTTCAAATGCGAGGCCAAAGGAAAAGGTACCACCTGCTGGTACAAAAACTAAACATTCGAGTGACTCATCATGTAATGTACTTCATATAAGAATTAAATCATTGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGAGGTGATGCTTCCTGAGTTGCAAGTTCGCAAAGGGCATCAGAAGAAAGAGAAACTTCAGTTTGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACCACAAAAAGGTCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGTTGGACTGATATTAAGAAGTTTTTGTTTTCTTCTTCAAGCTACAGAACTCCCATAGATCTGAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGTGCAGAAAAACAAGAAAGAGGCTGAGCAAAATGACGAGTTAGCCCTGCGTCCGTTACCATTTAATGTGGTACATCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTGCGTGTTAGCCAAGCTGGCACCTCTGTCGTTGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1365 0.4132 MDCEDYLRKCSNRKCQRVQVDESYVPALQDEVMEVEHLLAEPRNNLAPQDGSLDSHTTLNRKDDLELEVLDGLLDDVEIDDLEGADGFPGACEEYFLDFEFADKFEEVLGSGPFEGSESHSSGLSRSSIVGGVLESTEVPIAQSESKNDSLDETLTYESHGAFSNNPSQPSQGNCRYNISLDIQHLQELDNYRHLAGLTYKKEKGPTEKGQPAALREKRFRKPTQRYIEEFSNARPKEKVPPAGTKTKHSSDSSCNVLHIRIKSLKRSPSEKSSNENSEVMLPELQVRKGHQKKEKLQFEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASSVQKNKKEAEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKLRVSQAGTSVVADSPPVSLSKRNVRRKFT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00980 454 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 9 428 - -
Viun7g00980 454 SMART sant 326 379 IPR001005 -
Viun7g00980 454 ProSiteProfiles Myb-like domain profile. 322 377 IPR001005 -
Viun7g00980 454 MobiDBLite consensus disorder prediction 426 441 - -
Viun7g00980 454 MobiDBLite consensus disorder prediction 286 303 - -
Viun7g00980 454 Gene3D - 315 428 - -
Viun7g00980 454 MobiDBLite consensus disorder prediction 228 326 - -
Viun7g00980 454 Pfam Myb-like DNA-binding domain 329 377 IPR001005 -
Viun7g00980 454 SUPERFAMILY Homeodomain-like 329 397 IPR009057 -
Viun7g00980 454 CDD SANT_TRF 328 378 - -
Viun7g00980 454 MobiDBLite consensus disorder prediction 419 441 - -
Viun7g00980 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 321 381 IPR017930 -
Viun7g00980 454 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00980 Viun-Chr7 9851433 9860545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00980 327 377 Single Myb Histone (SMH) Gene Family AT1G15720 49.020 2.51e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun7g00980 Myb_DNA-binding 8.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00980 - - gmx:100810255 720.309