Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00920 ATGGGTTCAGATAGATCAAGATCCGTGAGATTTCAAGATGAACTTGAGACAAACAAGTTAATGGAGAACAAAGAAAAGCACTTGTCATTGGTGGCCTATGAGGAGATGAGTGAGAAACACAAGGTTGAGAAGGATGCTATAGGAAAATCAGGTGATGGAAGAGAACTTTCCAGAGTCTTCTCAGAGGACTATGATTCAACACAGATTTTGATATTGGATCCAAGGGGACCTACAATAAATACATGGAATAAAATTTTCTTAGCAGCATGTTTGCTTTCACTGTTTGTGGATCCCCTTTTCTTTTACTTGCCAGTGGCTAAGAAAGAGAAGTGCATTGATATGTCAACTGGTCTTGAAGTGTTCCTCACCATAATCCGGTCTCTGATAGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACAGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATCATAGACTCTTCAAAAATTGCATCAAACTACATGCGAAAAGACTTCTGGCTTGATCTTGTGGCTGCTCAACCACTTCCACAGGTATTAATTTGGGCCGTAATTCCAAATCTAAAAGGGTCTCAAATGATTGCTTCAAGGCATGTTTTGCGCCTTGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTGTCATCTGAAATCGTCAAGGCAAATGGGGTGATGATGGAAAAAGCATGGGCTGGGGCAGCATATAATCTCATGCTCTATATGCTGGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTGTCAATTGAACGCCAGAATGAATGTTGGAAGAAAGCTTGTACACTGCAGTACCCACAGTGCCAGTATCATTATCTTGATTGCCAAAGCATGGCTGACCCAGATAGGATTGCTTGGTTAAGATCAAGCAATCTCTCAAGCCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGAATTTTTACTGATGCTCTAGATTTGGAAATTACTGCCTCAAAATTCTTCAACAAGTACTATTACTGTCTTTGGTGGGGACTAAGGAATCTAAGCTCCGTGGGACAAAATCTCTTGACAGGCACACGTGTTGCAGAGATCAATTTTGCTGTGATCATTGCAGTTCTTGGATTGGTGCTTTTTGCATTACTCATTGGAAATATGCAAACATACTTGCAATCCACCACCACGCGGCTCGAAGAATGGAGAATAAGAAGAACAGATACGGAAAGATGGATGCGTCACAGGCAGCTCCCTCGTTATCTGAAGCAAAATGTAAGACGTCATGAACAATTCAGATGGGTTGCTACAAGAGGAGTTGATGAGGAAACTATTCTCAGAGACCTTCCCACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTCAATCTAGTTCGACAAGTACCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGGGCTTGTGTGGTTCGCGAAGGTGATCTTGTGAATGAGATGATTTTCATTGTTAGAGGACGCCTAGATTCTTGCACCACGAATGGTGGCAGAACAGGTTTCTTCAACTCATGCAGGCTTGGCTCCGGTGACTTCTGCGGTGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTCCAACGGTTGTACTTCCTTCCTCAACTCGCACGGTGAAAGCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCTGGGGACTTGAAGTTTGTGGCAGCACAGTTCAGAAGGTTGCACAGCAAGCAACTGAGGTATACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCAGCATGGTTCAGGTATAAGAGAATAAAGGAGACGAGTGAGCTGAAGAGAAAGGAGATTATGATGATGGCTTTTGTGCCTGGAAATGGTACTGAACATTTCTCTGCACCTCTGCAGGCTCCAATGGGCACTATGTATGCTGCAAAACTAGCATCCAGCCCAAGGAAAGGTAGAAGCCTGAGATATGGGCCTGAACTTGACATTCTTGGCTCACTGAGGAAGCCCCTTGAACCAGACTTCACTGATGATGATGATGATGGTTGA 2118 0.4334 MGSDRSRSVRFQDELETNKLMENKEKHLSLVAYEEMSEKHKVEKDAIGKSGDGRELSRVFSEDYDSTQILILDPRGPTINTWNKIFLAACLLSLFVDPLFFYLPVAKKEKCIDMSTGLEVFLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASNYMRKDFWLDLVAAQPLPQVLIWAVIPNLKGSQMIASRHVLRLVSIFQYLLRLYLIYPLSSEIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPQCQYHYLDCQSMADPDRIAWLRSSNLSSLCDQNSDFFQFGIFTDALDLEITASKFFNKYYYCLWWGLRNLSSVGQNLLTGTRVAEINFAVIIAVLGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMRHRQLPRYLKQNVRRHEQFRWVATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMIFIVRGRLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAGDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRIKETSELKRKEIMMMAFVPGNGTEHFSAPLQAPMGTMYAAKLASSPRKGRSLRYGPELDILGSLRKPLEPDFTDDDDDG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00920 705 SMART cnmp_10 474 605 IPR000595 -
Viun7g00920 705 CDD CAP_ED 474 605 IPR000595 -
Viun7g00920 705 FunFam Cyclic nucleotide-gated ion channel 1 472 590 - -
Viun7g00920 705 ProSiteProfiles cAMP/cGMP binding motif profile. 474 559 IPR000595 -
Viun7g00920 705 SUPERFAMILY cAMP-binding domain-like 403 596 IPR018490 -
Viun7g00920 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 669 - -
Viun7g00920 705 SUPERFAMILY Voltage-gated potassium channels 73 396 - -
Viun7g00920 705 Gene3D - 87 398 - -
Viun7g00920 705 Gene3D Jelly Rolls 472 592 IPR014710 -
Viun7g00920 705 PRINTS EAG/ELK/ERG potassium channel family signature 343 360 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun7g00920 705 PRINTS EAG/ELK/ERG potassium channel family signature 137 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun7g00920 705 PRINTS EAG/ELK/ERG potassium channel family signature 369 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun7g00920 705 PRINTS EAG/ELK/ERG potassium channel family signature 437 444 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun7g00920 705 PRINTS EAG/ELK/ERG potassium channel family signature 387 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun7g00920 705 PRINTS EAG/ELK/ERG potassium channel family signature 254 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun7g00920 705 Gene3D Helix hairpin bin 400 465 - -
Viun7g00920 705 Pfam Ion transport protein 81 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00920 Viun-Chr7 8883008 8886407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00920 48 701 Ion Channels AT2G28260 64.067 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00920 K05391 - gmx:100804375 1310.43