Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00908 ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGTCGGAGACACGGCGGTGGCGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCTCATCCGCCGGTGATTCCTCCGCCGGAAGTAACGGCGAACCGATTCGTGTACCCTCCCGCCGCTACGCCGTATCACAACTACCCCGGGTACTACCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCTCCTTACGACCACCACCATCGTCCGTCGGTGGACCCGATGTGGGGGAGGTACCCGGCTGCGCCGGCGCCGACGCCGTATGTGGAGCACCAGAAGGCTGTTACTATAAAAAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCAGACGAAGAGAACCCTGGCCGTTTCCTCGTGACGTTTACGTTTGATGCCACTGTTTCGGGGAGCATCACAATACTTTTCTTTGCGAAAGAAGGGGAAGGTTGCATCCTAACCCCAATGAAGGAAAATGTTCTTCCACCCGTTATTGTAAATTTCCAGCAAGGTCTTGGCCAGAGGTTTAAACAACCAGCTGGAACTGGTATTGATTTTTCGATATTTGAGGAGACCGAGTTATTGAATGTGGGGGACGACGATATCTATCCTGTTGCAATTAAAGCAGATGCATCCTCTGGTGACCCTGATGAATCAAAATCAAACGAAACTCCATCATCTGGTAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTTCAGGTGAAGGTTGTTAAGCAGATTTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGGTAATTCAGTGGAAAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATATGTTTGTCAGAACCTCGTGACACAACAGTCCTTCCGTGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAAACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAAACTGAGGAATGA 1047 0.5053 MGNIGSSGSNSRRRHGGGGSGRRIHPPPPHPPVIPPPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPSVDPMWGRYPAAPAPTPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGRFLVTFTFDATVSGSITILFFAKEGEGCILTPMKENVLPPVIVNFQQGLGQRFKQPAGTGIDFSIFEETELLNVGDDDIYPVAIKADASSGDPDESKSNETPSSGNTNSQITQAVFEKEKGEFQVKVVKQILWVNEMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPETEE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00908 348 Pfam Zinc finger, C3HC4 type (RING finger) 290 336 - -
Viun7g00908 348 FunFam probable E3 ubiquitin-protein ligase LOG2 276 341 - -
Viun7g00908 348 MobiDBLite consensus disorder prediction 24 41 - -
Viun7g00908 348 SMART ring_2 292 330 IPR001841 -
Viun7g00908 348 SUPERFAMILY RING/U-box 291 336 - -
Viun7g00908 348 ProSiteProfiles Zinc finger RING-type profile. 292 331 IPR001841 -
Viun7g00908 348 MobiDBLite consensus disorder prediction 1 41 - -
Viun7g00908 348 MobiDBLite consensus disorder prediction 214 236 - -
Viun7g00908 348 CDD mRING-HC-C3HC5_MGRN1-like 290 331 IPR045195 -
Viun7g00908 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 341 IPR013083 -
Viun7g00908 348 PANTHER MAHOGUNIN 1 341 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00908 Viun-Chr7 8494035 8497948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00908 87 311 C3H Transcription Factor Family AT3G09770 64.957 3.10e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00908 - - gmx:100789032 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00908 7 8494035 8497948 Viun7g00908 7 8494035 8497948 ECH
Viun1g02364 1 34093374 34098362 Viun7g00908 7 8494035 8497948 PCT