Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00903 ATGGCAACTGAAGCTACAGACTCTTCCAACCACAAAAATAACCAAGGCCATGGCACCACTGGAAGTAGAACTGATACCCCAATTCAAAAGGGTCCAGCATCATCTGAAATAACAGAGGAATTTCCAAGAGATCAACATGGGACAAGGCAAAACCTGATCGTGGATATACCTGCAGTATCTCAGGAGGAACAGAAAGAAGATTATGTGAGGATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGATTTTTTCCCCTTGCCCAAGTCCTGTTTACCCAAGAAGCAAAGAATCCCCAGGTCCCTCTTCATCAAAAAGTAGATCAAATATTAAAGCCTTTCTTCCTAAACTCAGTTTTAAATTTCGTAACACAAGTTCGGAGATTGAAAAGGCTGCTTTCCTAGCACTTGGAGGATCAGCAACAGTGGCACCAAAAAGGCCTTTTCTTTCAAGGACATTATCTCTTGTCACTCCTAGAGGGAAGAAAACGTCATCTTTACCCGTAACCCCAATTGCTCATTCAAATCCTGGGTCTGTACATGGCGGGAACATGGCTTATGCAGAAACAGTTGAGATTGAAATGAAATTACCAATTCATCGTTCTCGTTCAGTACCTATGCTTAACAAAGAAGGTAGCTCACCCGTACCTGGTATGTTTCGTATAGTTCCGACCACATTACGAGTGGATGATAAAATCGCCGCAACACCTATGACATCTCCAATTCATGATACTGTTCACAATGAGGATGGTGGTGAAGATATTCCGGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTTGGAGAAGGTGCTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAGTGTGCAGTCAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTGTGCAAGGAAGAGGTTCAGAATCTACCTGTCACTCTTTTACGAGTTCAAAACGGTCAGGCCCATAACATACTGGGGTCAGACGCTTCTCATTATAGGGTTTGGCAGGATGCTCCCGTTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTGGAGCAGCTTCTTGTGTCTAATATGGGATCCGGTTCTATTGCCATGTCTCTCCCATTTTCTTGTATATTGGGTCTTCTTGCAAGCATGACAGCAACAACAATGGTGAGGAGAAATCATGTTTGGATTTATGCAACTGTTCAGTTTTGTCTGGTGGTTCTTGCTGGGCATCTTTTCTTTTCATTGATTCATATGCAAGCTGTTCTTGCTATCCTACTAGCTACACTCACTGGCTTTGGAGTTGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTAAAGTGGAGGAGGAGATCCCTTGCTCAGTCAAATCAACAGCAAGGTTCCCAAGATGCAGTGCCACCAGATCAATCTTCTACAGTTGCTCATCAAGTTCAGACTGCTTCTGAACAAACTGAGAGCAATCTGGGAGAGTCTCCTCAACAGAGGAGTTGA 1509 0.4254 MATEATDSSNHKNNQGHGTTGSRTDTPIQKGPASSEITEEFPRDQHGTRQNLIVDIPAVSQEEQKEDYVRINMPLTPPPRRVIFSPCPSPVYPRSKESPGPSSSKSRSNIKAFLPKLSFKFRNTSSEIEKAAFLALGGSATVAPKRPFLSRTLSLVTPRGKKTSSLPVTPIAHSNPGSVHGGNMAYAETVEIEMKLPIHRSRSVPMLNKEGSSPVPGMFRIVPTTLRVDDKIAATPMTSPIHDTVHNEDGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKEEVQNLPVTLLRVQNGQAHNILGSDASHYRVWQDAPVLVVINMLAYFCFLEQLLVSNMGSGSIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFCLVVLAGHLFFSLIHMQAVLAILLATLTGFGVVMCGASILMEILKWRRRSLAQSNQQQGSQDAVPPDQSSTVAHQVQTASEQTESNLGESPQQRS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00903 502 MobiDBLite consensus disorder prediction 462 502 - -
Viun7g00903 502 CDD RING_CH-C4HC3_MARCH 261 309 - -
Viun7g00903 502 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Viun7g00903 502 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Viun7g00903 502 SMART ringv_2 260 309 IPR011016 GO:0008270
Viun7g00903 502 MobiDBLite consensus disorder prediction 1 33 - -
Viun7g00903 502 MobiDBLite consensus disorder prediction 80 108 - -
Viun7g00903 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 316 IPR013083 -
Viun7g00903 502 MobiDBLite consensus disorder prediction 159 180 - -
Viun7g00903 502 SUPERFAMILY RING/U-box 257 312 - -
Viun7g00903 502 PANTHER OS02G0165000 PROTEIN 10 472 - -
Viun7g00903 502 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00903 Viun-Chr7 8456002 8461558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00903 255 333 C3H Transcription Factor Family AT2G37950 37.500 2.38e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00903 - - gmx:100787963 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00903 7 8456002 8461558 Viun7g00903 7 8456002 8461558 ECH