Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00901 ATGGCCACGAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACAGAAGGGGTCACAACCTTCCATGGAAGCTACGACAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTGTATATCTGCCCCGAACAATCCTGCGTCCACCACGACCCTGCAAGAGCGCTCGGCGACCTCACCGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAGACCTGCGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGAAAGGACAGCTTCATTACCCACAGAGCATTTTGCGATGCCTTGGCAGAAGAGAGTGCGAGACTCACCTCAGTCACCTCAACAAATCTAAATTTCAAGAGCGAAGAGGGTGGTAATGTGATGAACTCGCAGGGTGGTTTGGGAGGGCATGGACTAATTGCAGCAGCAGCAGCAGCACAAAGTCTTCAAAACGTTTCTGGCATTCCACAATTCGGGCCACATGGTTTTCGGTTGGATTTTAATGGAATGGAACAACCAAGGCCTAGCTTGTCGCTGTGGTTGAACCAGGGGAATCCCCAGATGAATAATAATAATAATAATGGTAATGTTAACGGCAACAATAATGGTCCCGATGTGGGGCCCAATTACATGTCGTCATGTTCTTCCTCAGGTTTGCCTGATATTGTGCAAATGGCTCAGGCTAATGGTTTGATGGGTTCTACATCGATGGTGTCTAATTTTGGGGTGCCTGCGGGTTCTAATTCTACCAGTGCAAATCTTTCTCTGTCGTCACTTCCTATTGGAAAAAGAGGGGAAGCAGGTGGAACTGTAGTGGACTTGGCGTCTATTTATAACTCTGAGGGTCCAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCGCAGATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTCGGTGTGATGAACTCACCTTCCTCGCAAACTACCAGTCTCAATAATAACAACAACGCCGCTGCAGCCATCATGCTGCCAAGTAATACCACTGCTGCACCTGATTTCACCTCATTGACGCATTCACCAAACACTTTTGACCAACTCGTGATGCAAACCAATGCGCAGCTGCAAAGTGAGCCTGTCAAGTTAAAGCTTCGTTCAAGCGCCGCGGAGCACAATTTGACAAGGGATTTTCTCGGAGTCAGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGACCTCAGTTCCTACCCCAAGAACTTGCAAAGTTTGCTTCCATGGGGTCGCCTATGGGGTTGAGCCATTTCACCAGCAACCAATGA 1425 0.4884 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSTNLNFKSEEGGNVMNSQGGLGGHGLIAAAAAAQSLQNVSGIPQFGPHGFRLDFNGMEQPRPSLSLWLNQGNPQMNNNNNNGNVNGNNNGPDVGPNYMSSCSSSGLPDIVQMAQANGLMGSTSMVSNFGVPAGSNSTSANLSLSSLPIGKRGEAGGTVVDLASIYNSEGPNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNAAAAIMLPSNTTAAPDFTSLTHSPNTFDQLVMQTNAQLQSEPVKLKLRSSAAEHNLTRDFLGVSGGGGGGGGGGGGGGPQFLPQELAKFASMGSPMGLSHFTSNQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00901 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Viun7g00901 474 MobiDBLite consensus disorder prediction 430 452 - -
Viun7g00901 474 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Viun7g00901 474 FunFam Zinc finger protein MAGPIE 2 29 - -
Viun7g00901 474 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Viun7g00901 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 448 IPR031140 -
Viun7g00901 474 SMART c2h2final6 82 102 IPR013087 -
Viun7g00901 474 SMART c2h2final6 47 77 IPR013087 -
Viun7g00901 474 SMART c2h2final6 6 28 IPR013087 -
Viun7g00901 474 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Viun7g00901 474 Gene3D Classic Zinc Finger 61 139 - -
Viun7g00901 474 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00901 Viun-Chr7 8440912 8444370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00901 1 373 IDZ Gene Family AT5G66730 48.232 3.80e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g00901 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00901 K25870 - gmx:100801182 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00901 7 8440912 8444370 Viun7g00901 7 8440912 8444370 ECH
Viun1g02359 1 34054473 34056906 Viun7g00901 7 8440912 8444370 PCT